| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0790 |
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| Symbol | |
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| ID | 7971842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 872110 |
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| End bp | 872958 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791388 |
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| Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
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| Protein accession | YP_002942709 |
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| Protein GI | 239813799 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTCG TTCGCTATGG CAACCCCGGC AAGGAAAAGC CCGGCCTCAT CGATGACAAC
GGCCAGCTGC GCGACCTGAG CGCGCTGGTC AAGGACATTG GGCCCGAGCA GCTCGGCGAT
GCCGCGCTGG CCAAGCTGCG CAAGCAGAAG GTCGACAAGC TGCCGCTGGT CAAGGGCAAG
CCGCGCTTCG GCAGCCCGGT GGCCAACGTC GGCAAGTTCA TTGCCATCGG CCTGAACTAT
GCCGACCATG CGGCCGAGTC CGGCCTGCCG ATTCCGAAGG AGCCTGTGGT CTTCATGAAG
GCCACCAGCT GCATCCAGGG CCCGAACGAT CCGGTCATGC TGCCCAAGAA CTCGGTCAAG
AGCGACTGGG AAGTCGAGCT CGGCGTGGTC ATCGGCACGC GCGCGCGCTA CGTCTCGCAG
AAGGACGCGC TCAACTTCGT GGCCGGCTAC TGCACCATCA ACGACGTGAG CGAGCGCGAG
TTCCAGATCG AGCGCGGCGG CACCTGGGAC AAGGGCAAGG GCTGCGACAC CTTCGGCCCC
ATCGGCCCCT GGCTCGTGAC GCGCGACGAA GTGCCCAACC CGCAGAAGCT GTCGATGTGG
CTCGACCTCA ACGGCAAGCG CATGCAGACC GGCAGCACCA AGACCATGAT CTTCAGCATT
GCCAAGATCG TGAGCTACCT GAGCCAGTTC ATGACGCTCC TGCCCGGCGA CGTCATCACC
ACCGGCACGC CGCCCGGCGT GGGCCTGGGC ATGAAGCCGC CGCTTTACCT GAAGAAGGGC
GACGTGATGA CGCTGGGCAT CGAAGGCCTG GGCGACCAGC GCCAGGAAGT GGTTCCGTTC
AAGCTGTAA
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| Protein sequence | MKLVRYGNPG KEKPGLIDDN GQLRDLSALV KDIGPEQLGD AALAKLRKQK VDKLPLVKGK
PRFGSPVANV GKFIAIGLNY ADHAAESGLP IPKEPVVFMK ATSCIQGPND PVMLPKNSVK
SDWEVELGVV IGTRARYVSQ KDALNFVAGY CTINDVSERE FQIERGGTWD KGKGCDTFGP
IGPWLVTRDE VPNPQKLSMW LDLNGKRMQT GSTKTMIFSI AKIVSYLSQF MTLLPGDVIT
TGTPPGVGLG MKPPLYLKKG DVMTLGIEGL GDQRQEVVPF KL
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