| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0716 |
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| Symbol | |
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| ID | 7974679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 781680 |
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| End bp | 784085 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791315 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_002942636 |
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| Protein GI | 239813726 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.317239 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCTTC CATTCCCCGC CGCCCCCCGC CTGAGCCTGC GCGCCCGACT GTCCGCGGGC
GTGCTGGCAA TCGTCTTCCT GACGACGATG GGCGTCACCG CCGCGGCGCT TTATTTCCTC
AAGCGCAGCA TGGAGGCGGC CATTGCGAGC GAGGAATTCG AACGCATCTC CGCCATCGCC
GGCGCGGTGG ACCAGAAGTT CCTGAGCCGG CGCACCCTGC TCAAGACCTT CGGCGACGGC
GTCGAGAGCC GCAACCTGGC CGGCCCCGGG GAACTGCAGG AGCTGGTCAT GCAGCACGGC
GCGCTGAGGG AGGCGTTCGA CAACGTGGCC CTCACCGGCA TGGACGGCGA ACTGGTGGCC
AACCTCAACG GCACGCAGCC GATCGGCAAG GTCAACATCA AGGACCGCGA GTATTTCCAG
CGCACGGTCG CTGCCCGCGC GGGCGTCATC TCCAAGCCCT TCCGCAACCG CGTGAGCGGC
CTGGCGCAGA TCGCCATGAC CGAGCCCGTG CTCGACCGCA GCGGCAATGT CGCCTACGTG
ATCTCGGCCT TCGTCAACCT CAAGGAGAAG AACTTCCTGG GCGAGCTTGC CAATGTGAAG
TTCGGCAAGA GCGGGTACAT GTTCATCACG AACGCCGATG GCATCGTCAT CGACCATCCC
GACAAGTCGA AGCTGCTTCA GCGCGTGGAC GCCGGCGGCG TGCGCAACCC CGCGATCGAG
CGCGCCATCG CGGGCTTCGA GGGTGCCATC GAAGCGGCCG ATTCGCAGGG CGTGCACGGG
CTCTACGCCT TCAAGCGCAT CGGCCAGACC AACTGGGTGC TGGGCGCGGT GTATCCGCGC
GACGAGGCCT TTGCGCGCAT TGCGCGGGTC GAGCGCTACG CCTGGGCCGG CGCGCTGCTG
CTGACGCTGC TGGCCGGCGG GCTGGCCTTC ATGACCGCGC GGGCGCAGCT CGCACCGCTG
TCGCGCCTGC GCGAGCACAT GCAGGTCTCG CGCGCCGCCA GCGCCTATGC GCCCATGCGG
GAGGCACCGC CGGACGACGA GGTCGGCGAT CTCTCGCGGA CCTTCGACCT GCTGATGACG
GAGCGGCAGG CCGCCAACGA GAAGCTGGCC GCCAGCGAGA GATTCCTGCG CGACGTGACC
GACAACCTGC CGGCCGTGGT TGCCTACTTC GACAGCAGCC AGCGCTGCCT GTTCGCGAAC
AAGGCCGGCC TCGGCATGCG CGGCAGGACG GTGGCCGACA TCGGGCGCAT GACCATGCAG
GAGTCGCTGC CCGACCACGT CTACCGGCAG CTCGTGCCGG GCATCGCCAA GGTGCTCGCC
GGAACGCCGA CGCGCACCGA AGGCACCTAC GAGCGCAACG GCAAGCCGGG CTTCTTCGAA
TGCCACCTGG CGCCCGACAT CCGCGAGGAC GGCACATTGG CCGGCTACTA CGTGATGACC
TTCGACGTGA GCAAGCGCAA GCAGGCCGAG ATGCACAGCG CCGAAAGCGA GCGGCGCCTG
CGCGGGCTGA CCGACAACGT GCCGGCGCTC CTTGCCGAGC TGGATCTCGA GGAACGCGTG
GTCTTCTGCA ACGGCAAGTA CCAGGCCTGG CTCGGCGTCT CGCCGGAGGC GATGGCGAAC
CGCCCCGTCC ACGAGGCCAT CGGCGAGGCG CACTACGAAA TCCGCAGGCC GCTGCTGGCG
CGGGCATTCG CGGGCGAGGT GGTGTCCTTC GAGCAGACCG CCCGCCTGCT GATCGGCGAG
CGGACCTTGC AGACCACCTA TCTGCCCCAG CGCACCGCGC AAGGCGCGGT CACCGGGCTG
TACATCCTGT CGAACGACGT CACCGAGCTC AAGCAAAAGC AGATGAAGCT CGATGCCTTG
GCGCGCGAGG ACGCGCTCAC CGGCCTGCCC AACCGCCGAT CGTTCGAGGA GCATGCGCGC
GACGCCATGG CCAGGTCCCG GCGCGCCGGC CTGCCGGTCT GCCTGCTGTT CCTGGACATC
GACTACTTCA AGACGATCAA CGATTCGCTG GGCCATGCGG CGGGCGATGC GGTGCTGCGG
GAATTCGGCC GCCGGCTCAG GGAGAGCGTG CGCGAGACCG ACATGGCGGC GCGCTACGCG
GGCGACGAGT TCGTGATCCT TCTCGAAGGT GCCAGCGGCG CCGCCGAGGC GCAGGTGGTG
GCCGGCAAGG TGCTGGCCGC CATGCGGCCG GCTTTCCACC TGCCCGGCCG CACGCTGCAG
GCCACCACCA GCATCGGCGT CGCGGTCTCG GAGGACGACG AGGACTTCGC GTCCTTGTTC
GTGCGTGCCG ACACCGCGCT CTATGCGGCC AAGAAAGAAG GAAAGAACCG CTTCATGATG
GCGCCGCCCC GGTCTGCAAA ACCCGGCGGC GCGTCGTGGC CGCGCGAAGA GCCTTCGAGC
GCCTGA
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| Protein sequence | MRLPFPAAPR LSLRARLSAG VLAIVFLTTM GVTAAALYFL KRSMEAAIAS EEFERISAIA
GAVDQKFLSR RTLLKTFGDG VESRNLAGPG ELQELVMQHG ALREAFDNVA LTGMDGELVA
NLNGTQPIGK VNIKDREYFQ RTVAARAGVI SKPFRNRVSG LAQIAMTEPV LDRSGNVAYV
ISAFVNLKEK NFLGELANVK FGKSGYMFIT NADGIVIDHP DKSKLLQRVD AGGVRNPAIE
RAIAGFEGAI EAADSQGVHG LYAFKRIGQT NWVLGAVYPR DEAFARIARV ERYAWAGALL
LTLLAGGLAF MTARAQLAPL SRLREHMQVS RAASAYAPMR EAPPDDEVGD LSRTFDLLMT
ERQAANEKLA ASERFLRDVT DNLPAVVAYF DSSQRCLFAN KAGLGMRGRT VADIGRMTMQ
ESLPDHVYRQ LVPGIAKVLA GTPTRTEGTY ERNGKPGFFE CHLAPDIRED GTLAGYYVMT
FDVSKRKQAE MHSAESERRL RGLTDNVPAL LAELDLEERV VFCNGKYQAW LGVSPEAMAN
RPVHEAIGEA HYEIRRPLLA RAFAGEVVSF EQTARLLIGE RTLQTTYLPQ RTAQGAVTGL
YILSNDVTEL KQKQMKLDAL AREDALTGLP NRRSFEEHAR DAMARSRRAG LPVCLLFLDI
DYFKTINDSL GHAAGDAVLR EFGRRLRESV RETDMAARYA GDEFVILLEG ASGAAEAQVV
AGKVLAAMRP AFHLPGRTLQ ATTSIGVAVS EDDEDFASLF VRADTALYAA KKEGKNRFMM
APPRSAKPGG ASWPREEPSS A
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