| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0715 |
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| Symbol | |
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| ID | 7974678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 778681 |
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| End bp | 781650 |
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| Gene Length | 2970 bp |
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| Protein Length | 989 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791314 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002942635 |
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| Protein GI | 239813725 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACAAGC CTGTGCCCAG CCGCATCACC GGCTTCGTCT ATGGCGTTGC GGCGCTGTTT
CTCGCGGCCG TGCTCGCCAT TGCCGGGCTG ATGGCATGGC AGATGTACCA GAAGGAGATT
GCCGACAGCG AGGCCCAGGC CGTGCGGTTC ATCGGCACCT CGGAGGCTGC GCTCAACCGC
AGCCTGCTCG GGGCGAACAC GCTGCTGGCG GGCCTGGGGC AGTTCCTGCG CAAATCCAGC
GGAAGCACCA TTGCAGGCGA CATTGCGCAA GCCGAGACCG TCCAACTGGT CGAAACCAGC
GTTCGCCAGA GCCTGCTGGC GCGCTACGTC GCCTTCCTGA CGCCCGAGGG GCAGGTGGTC
GGGTCTTCCG ACCGGCGCGG AGCGAAGCTG GCGGTCCAGC TGCCCGACGG ATTCCTGCAA
GAGGTCCTGG GCCGGCCGGG ACCGGTGATG TCGATCAGCA CGCCCTCGGT CAGCCCGGTG
ACTTCCCAGC AGGTGCTGCA TCTTGCGCGC GTCCTCACGC TGGCGGACGG CAGCAAGCTG
GTCGCGGTGG CCGAAGTGCA GGTCTCGGTG CTCACCACCA TCCTTGCGCA AGGGGCCAAC
ATCAGGGGGC TCGAGGTCAC GCTGGAGCGC GAAGGCGGGC TGCTGCTGGC CAGCATGCCG
CCGCGCGACG ACCTTGCGGG GCGCACCATC AGTCCCGCGT TGACCGACCA GGCGGACGGG
CGTCCCCGGC ACATGCATTC CCGGCTCAGC GGCGCTCCGG CCATCGTGGT GGCCCGGCCC
ACGCTGCATC GGGGCCTGCT GATCGTCGCG AGCATTCCGC TCGAGTCCGC GCTCGAGGAT
TGGCGCAGGG ACCGCAACGT GGTTGCGGCC GCGGCCCTGG CCTTCGCGCT GATGATCCTG
GCCGTCACTT ACTTCGCGCT CGCGCAGCTG CGGCGGCAGT GGCGCGCGCG CGCGGAGCTG
CTGCGCTCCA AGGCCACGCT GGACCAGGCG CTCGAATCCA TGGTGGACGG CTTCGTGCTG
CTCGATCCCA ATGACCGCGT CGTCACCTGG AACCGCCGCT TCGTGGACTT CTTTCCCTGG
ACGCAGCCGC TGCTCGCGCC GCTGGTGCCG TTCCAGCAGA TCGTGGAGCA AAACGCGCGC
CACCTGCTGA CGCAGAACGA CCAGGAGATC ACGCTGCTGA ACGGGCAGGT GATCGTTGCG
GTGAACAGTC CCACGCCCGA CGGCGGCCTG GTGTGCGTCT ACCGCGACGT GACCGAGAAG
AAGCGCCACG TCGCGGACAT CCTCGAAGGC AAGGCGCAGC TGCAGGCCAC GCTGGATGCC
TTGCCCGACG TGCTGATGGA CGCCGGCATC GACGGCCGCT GCTACAGCTT CCATTCGCCG
CGCCGCCCCA GGCCCGCGTT CAAGGTGCGG GAGCCCGTGG GCAAGCTGAT GTCGGACCTG
CTGCCGGCGA ATGCCGCGGC CGAGGTGATG GTGGCGCTGC GCGATGCCTT CGAAACCGGC
TTTTCCACCG GCCGGCAGTT CGAGATCCGC ACGGCGCGGG GCGTCACGTG GTTCGAGATT
TCGGTCTCGC GCAAGGTGAT CGGCGAGGGC GCCGCCGCGC GCTTCATCGT GATCCTGCGC
GACATCACCG AGAGCAAGCT GGCCGCCCGC GAGATCGAGC ACCTGGCCTT CTACGACATC
CTCACGGGCC TGCCCAACCG CCGGCTGCTG CTGCACCGCC TGCAGGCCAC CATCGACGCG
AACGTGCGGC GCTCGCGCCA CGGCGCGCTG CTGTTCCTGG ACCTGGACGC TTTCAAGACG
CTCAACGATG CGCTCGGGAA CGCCACGGGC GATGAGCTGC TCAAGCAGGT GGCCGTGCGG
CTGCAGGACA GCCTGAAGGA AGGCGGCACG GTCGCGCGGC TCGGAGGCGA CGAATTCGTG
GTGCTGCTGG ACAACCTCAG CGAAGACGCC GGCGTTGCCG CGATGCAGGC CAATGCCGCG
GGCGAGGCCA TCCTCGCGGC GCTGAACGGG ACTTTCCAGC TCGCGGACCA CCAGTACCAC
AGCACCGGCA GCATCGGCGC CGTGGTGTTC AGCGCCACGC AGCAGTCGCT GGAGGATCTG
CTGAAGCAGG CGGACATCGC GATGTACTAC GCCAAGTCTG CGGGCGGCAA CGCGCTGCGT
TTCTTCGAGG CTTCGATGCA GACCGCCATC ACGGCCCGCG CAACGCTGGA GAGCGAGCTC
CACGCGGCGC TGGCGGGCGA GCAGTTCGTG CTGCACTACC AATCGCAGGT GGCCTCCAAT
GGCCACGTGG TGGCCGCCGA GGTGCTGATC CGCTGGCAGC ATCCGGTGCG GGGCATGGTG
CAGCCCGGAG GCTTCATCGA GCTGGCGGAG GAAACCGGGC TGATCGTGCC GATCGGCATG
TGGGTGCTGG AGACGGCCTG CGTCCAGCTC GAGCGCTGGA GCCACGATGC GAGGCGCCGG
CACCTGCGGC TGGCGGTGAA CGTCAGCGCG CGCCAGTTCC GCACCGACGA CTTCGTGGAC
CGCGTGCGCG ACGTGCTGCG GCGCACCGGC GCCGACCCGA CGCGGCTGGA GCTCGAGCTC
ACCGAAAGCC TGCTGCAGGA CAAGGTGAGC GAAACGATCT GCAAGATGCA GGCGCTCGCG
GCACTGGGCG TGCGCTTTTC CATGGACGAC TTCGGCACCG GCTTCTCGTC GCTCTCCTAC
ATGACCCAGC TGCCGCTGAA CCAGATCAAG GTCGACAAGT TCTTCGTGCA GAGCATCGGC
CTCGATCCGA AGGTCGAGCT GATCATCCAG GCCATCATCG GCATGGCCCG CAACCTCGAC
CTGGAGATCG TGGCGGAGGG CGTCGAGACG CAGCAGCAGT TCGAGTTTCT CCAGGCGCAC
GGCGCCATGC TGTGCCAGGG CTACCTGTTC AGCAGGCCGG TGCCGCTGGA CCAGTTCGAT
GCCCAGCTGG ATGTCGAGAT GGCGAGCTGA
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| Protein sequence | MNKPVPSRIT GFVYGVAALF LAAVLAIAGL MAWQMYQKEI ADSEAQAVRF IGTSEAALNR
SLLGANTLLA GLGQFLRKSS GSTIAGDIAQ AETVQLVETS VRQSLLARYV AFLTPEGQVV
GSSDRRGAKL AVQLPDGFLQ EVLGRPGPVM SISTPSVSPV TSQQVLHLAR VLTLADGSKL
VAVAEVQVSV LTTILAQGAN IRGLEVTLER EGGLLLASMP PRDDLAGRTI SPALTDQADG
RPRHMHSRLS GAPAIVVARP TLHRGLLIVA SIPLESALED WRRDRNVVAA AALAFALMIL
AVTYFALAQL RRQWRARAEL LRSKATLDQA LESMVDGFVL LDPNDRVVTW NRRFVDFFPW
TQPLLAPLVP FQQIVEQNAR HLLTQNDQEI TLLNGQVIVA VNSPTPDGGL VCVYRDVTEK
KRHVADILEG KAQLQATLDA LPDVLMDAGI DGRCYSFHSP RRPRPAFKVR EPVGKLMSDL
LPANAAAEVM VALRDAFETG FSTGRQFEIR TARGVTWFEI SVSRKVIGEG AAARFIVILR
DITESKLAAR EIEHLAFYDI LTGLPNRRLL LHRLQATIDA NVRRSRHGAL LFLDLDAFKT
LNDALGNATG DELLKQVAVR LQDSLKEGGT VARLGGDEFV VLLDNLSEDA GVAAMQANAA
GEAILAALNG TFQLADHQYH STGSIGAVVF SATQQSLEDL LKQADIAMYY AKSAGGNALR
FFEASMQTAI TARATLESEL HAALAGEQFV LHYQSQVASN GHVVAAEVLI RWQHPVRGMV
QPGGFIELAE ETGLIVPIGM WVLETACVQL ERWSHDARRR HLRLAVNVSA RQFRTDDFVD
RVRDVLRRTG ADPTRLELEL TESLLQDKVS ETICKMQALA ALGVRFSMDD FGTGFSSLSY
MTQLPLNQIK VDKFFVQSIG LDPKVELIIQ AIIGMARNLD LEIVAEGVET QQQFEFLQAH
GAMLCQGYLF SRPVPLDQFD AQLDVEMAS
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