| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0700 |
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| Symbol | |
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| ID | 7974663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 759306 |
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| End bp | 761147 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791299 |
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| Product | PQQ-dependent dehydrogenase, methanol/ethanol family |
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| Protein accession | YP_002942620 |
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| Protein GI | 239813710 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGACT CACGGTCGAT GCGAAGCCAG AAACACACCA AGAAGAAGCG CCGCGCCGGA
TGGGCCGGCC TGCTGCTGCT GAGCAGCCTC TTGCCGGCCT CGCTCGCGCT CGCGCAGCCC
GCGCCGGCCG ACGGCATGCC GCACGGCGGC GGTGACGGCG AATGGACCAT GGCCGCGCGC
GACCATGCGG GCACGCGCTT CAGCCCGCTG GCCGAGATCA CGAGCGCCAA CGCCGCGAAG
CTGCAGCCGG CCTTCACCTT TTCCACCGGC GTGGTGCGCG GGCACGAGGC CGCGCCGCTG
GTGGTGGGCG GCACGATGTA CATCGTGGGC CCCTACCCCA ACACGCTCTT CGCGCTCGAC
CTCGCCAAGC CCGGCGCGCC GCTCAAGTGG AAGTTCGAGC CCAGGCCCGA GGCCGGCTCG
CAGGGCGTGG CCTGCTGCGA CCAGGTCAAC CGCGGCGCCG CCTATGCGGA CGGCCGCATC
TTCTTCAACA CGCTGGACAA CCAGACCCTC GCGGTCGACG CGGCAAGCGG CGCCGAGCTC
TGGCGCGCGA AGCTCGGCGA CATCCGCAGC GGCGAGACCA TGACGATGGC GCCGCTGGTG
GTCAGGAACA AGGTGCTGGT GGGCAACAGC GGCGGCGAGT TCGGCGTGCG CGGCTGGCTT
GCCGCTCTCG ATGCCGCCAC CGGCAAGACC GTGTGGCGCG CATGGAGCAC GGGGCCGGAC
AGCGACGTGC TGATCGGCCC GCAGTTCAAG CCCTTCTATG CGCAGGACCG CGGCAAGGAC
CTGGGCGTGA GTTCCTGGCC GCCCGAGGCC TGGAAGATCG GCGGCGGCAA CGCATGGGGC
TGGATCTCCT ACGACCCCGA GCTCGACCTC GTCTACTACG GCACTGGCAA TCCGGGGCCA
TGGAATCCCG AGCAGCGGCC GGGCGACAAC CGCTGGACCG CCGGGATCTT CGCGCGCCGC
CCGGACACCG GCGAGGCGGT CTGGTTCTAC CAGTTCAGCC CGCACGACCT GCACGACTAC
GACGGCGTGA ACGAGAACAT CCTGGTCGAC GCCGAAGTGG GCGGCAAGCC GCGCAAGGTG
CTGGTCCACC CCGACCGCAA CGGCCACGTC TACCTGCTCG ACCGCGCGAG CGGCGAGGTG
CTGTCGGCCC GGCCCTTCGT GAAGGTGACG ACCTCCCTGG GCGTGGACCT GCAGACCGGC
CGCCTGCGCC AGGACCCGGC CAGGGAGCCG AAGGTCGGCA AGACCATCCG CGGGATCTGC
CCGGCCTCGC CCGGCGGCAA GGACTGGCAG CCTTCGGCGT ACTCGCCGCG CACGCGGCTG
GTCTACATCC CGCACCAGAA CCTATGCCAG GACAGCCAGT CCTCCCAGGT CAGCTACATC
GCGGGCACGC CGTATGTGGG CACCGATGCG CGCATGTACG CGGGGCCCGG CGGCCAGCGC
GGCCGCTTCA CCGCATGGGA CCCGGCCGCC GGCAAGGCCG CGTGGACGAA GGAAGAGAAT
TTCCCGGTCT GGAGCGGCGC GCTCGCGACC GCGGGCGACG TGGTCTTCTA CGGCACGATG
GACGGCTGGT TCAAGGCCCT CGATGCACAT ACGGGCGCAC TGCTGTGGCA GTACCGGACC
GACTCCGGGA TCATCGGCCA GCCGGTGTCC TACCGCGGAC CCGACGGCAG GCAGTACGTG
GCCGTGCTGT CGGGCGTCGG CGGCTGGGCG GGCGCGGTGG TTTCGGGCGA CCTGGACGCG
CGCGACGGCA CCGCTGCGCT GGGTTTCGCC AACGCCATGA GGGACCTGCC CGCGGCCACG
CGCAAGGGCG GCAAGCTGTA TGCCTTCAAG CTGCCGGACT GA
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| Protein sequence | MPDSRSMRSQ KHTKKKRRAG WAGLLLLSSL LPASLALAQP APADGMPHGG GDGEWTMAAR
DHAGTRFSPL AEITSANAAK LQPAFTFSTG VVRGHEAAPL VVGGTMYIVG PYPNTLFALD
LAKPGAPLKW KFEPRPEAGS QGVACCDQVN RGAAYADGRI FFNTLDNQTL AVDAASGAEL
WRAKLGDIRS GETMTMAPLV VRNKVLVGNS GGEFGVRGWL AALDAATGKT VWRAWSTGPD
SDVLIGPQFK PFYAQDRGKD LGVSSWPPEA WKIGGGNAWG WISYDPELDL VYYGTGNPGP
WNPEQRPGDN RWTAGIFARR PDTGEAVWFY QFSPHDLHDY DGVNENILVD AEVGGKPRKV
LVHPDRNGHV YLLDRASGEV LSARPFVKVT TSLGVDLQTG RLRQDPAREP KVGKTIRGIC
PASPGGKDWQ PSAYSPRTRL VYIPHQNLCQ DSQSSQVSYI AGTPYVGTDA RMYAGPGGQR
GRFTAWDPAA GKAAWTKEEN FPVWSGALAT AGDVVFYGTM DGWFKALDAH TGALLWQYRT
DSGIIGQPVS YRGPDGRQYV AVLSGVGGWA GAVVSGDLDA RDGTAALGFA NAMRDLPAAT
RKGGKLYAFK LPD
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