Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0592 |
Symbol | |
ID | 7973576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 651480 |
End bp | 652127 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644791199 |
Product | putative proline rich signal peptide protein |
Protein accession | YP_002942521 |
Protein GI | 239813611 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAAACG TCCGCGCTGA GGCCCGCAGG CGGCGCATCC TGGCGCCGCT GGCCGGGCTC GTGCTGGCCT GGGCATTGCT GCTGACCTGC CTGCTTCCGA TTGCGGTGGC GCAGGGGCGC GTCGTGCCAT CGGTCACCCA GATGCGGCTG GAACAGGCCG ACGACGGCGT CTACCTCACC GCGGCCGTGC AGTTCGAGCT GCCCTCGCTG GTCGAGGAAG TGCTCGACAA GGGCATTGCC ATCTATTTCG TGGCCGAGGC CGAGGTCTTC CAGGAGCGCT GGTACTGGAC CGACCGCAAG GTGGCCCAGG TCACGCGCCA CATGCGGCTG GCCTACCAGC CGCTCACGCG CCGCTGGCGG CTCAACGTGT CGCCGGTGCC CATCACCGGC ACCGCGGGCT TCGGCGTTTC GCTGAACCAG AACTTCGACA GCCTCGCCGA CGCCATGGAT GCCGTCAAGC GGGTCGGCCG GCTGCGGCTG GGCGATGCGG CCGAGGTGGG CGACGAGGCG CAGCACCAGG TCGTGTTCCG CTTCCGGCTC GACACCTCGC AGCTGCCGCG TCCGTTCCAG ATCGGCGTGG TCGGCCAGGC CGACTGGAAC ATCGTGGCCG AGCGCAGCGC CAAGCTCGCG CTGGAGAAGC AGCGGTGA
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Protein sequence | MKNVRAEARR RRILAPLAGL VLAWALLLTC LLPIAVAQGR VVPSVTQMRL EQADDGVYLT AAVQFELPSL VEEVLDKGIA IYFVAEAEVF QERWYWTDRK VAQVTRHMRL AYQPLTRRWR LNVSPVPITG TAGFGVSLNQ NFDSLADAMD AVKRVGRLRL GDAAEVGDEA QHQVVFRFRL DTSQLPRPFQ IGVVGQADWN IVAERSAKLA LEKQR
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