| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0589 |
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| Symbol | |
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| ID | 7973573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 645089 |
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| End bp | 649318 |
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| Gene Length | 4230 bp |
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| Protein Length | 1409 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644791196 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_002942518 |
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| Protein GI | 239813608 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCGC TACTCGACCT GTTCAAGCAA TTCACCCCTG ATGAGCATTT CGATGCCATC
AAGATCGGCA TGGCTTCGCC CGAGAAGATC CGTTCGTGGT CTTTCGGCGA GGTGAAGAAG
CCCGAGACGA TCAACTACCG CACGTTCAAG CCCGAGCGCG ACGGCCTCTT CTGCGCGAAG
ATCTTCGGCC CCATCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTGAAGCAC
CGCGGCGTGA TCTGCGAGAA GTGCGGCGTC GAAGTCACGC AGACCAAGGT GCGCCGCGAG
CGCATGGGCC ACATCGACCT GGCCGCGCCC TGCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGCC TGGGCCTGGT GCTCGACATG ACGCTGCGCG ACATCGAACG CGTGCTGTAC
TTCGAAGCCT ACGTGATCAC CGACCCCGGC ATGACCCCGC TGAAGAAGTT CGGCATCATG
TCCGAGGACG ACTATGACGC GAAGCGCAAG GAATACGGCG ACGAGTTCGT CGCCAAGATG
GGCGCCGAAG GCATCAAGGA CCTGCTCGAA GGCATCGAAC TCGACAGCGA GATCGAACGC
CTGCGCGGCG ACCTGACCGG CTCCGAAGTC AAGGTCAAGA AGAATTCCAA GCGCCTGAAG
GTGCTGGAAG CCTTCCGCAA GTCGGGCATC AAGCCCGAGT GGATGGTGCT CGACGTGCTG
CCCGTGCTGC CGCCGGACCT GCGTCCGCTG GTGCCGCTGG ACGGCGGCCG CTTCGCGACC
TCCGACCTGA ACGACCTGTA CAGGCGTGTG ATCAACCGCA ATTCGCGCCT GCGCCGCCTG
CTGGAACTCA AGGCTCCGGA AATCATTGCT CGCAATGAAA AGCGGATGCT GCAGGAAGCA
GTCGACTCGC TGCTGGACAA CGGCCGCCGC GGCAAGGCCA TGACGGGCGC CAACAAGCGC
GCGCTCAAGT CGCTCGCCGA CATGATCAAG GGCAAGAGCG GCCGCTTCCG CCAGAACCTG
CTGGGCAAGC GCGTCGACTA CTCGGGCCGT TCGGTCATCG TGGTGGGCCC GACGCTCAAG
CTGCACCAGT GCGGCCTGCC CAAGCTGATG GCGCTCGAGC TGTTCAAGCC CTTCATCTTC
TCGCGCCTCG AAGCCATGGG CATCGCGACC ACGATCAAGG CTGCCAAGAA GGAAGTCGAA
TCGGGCACAC CGGTGGTCTG GGACATCCTG GAAGAAGTGA TCAAGGAACA CCCGGTCATG
CTGAACCGTG CGCCTACGCT GCACCGTTTG GGCATCCAGG CGTTCGAGCC GATCCTGATC
GAAGGCAAGG CGATCCAGCT GCACCCGCTG GTCTGCGCGG CCTTCAACGC CGACTTCGAC
GGCGACCAGA TGGCCGTCCA CGTGCCGCTG TCGGTGGAAG CGCAGATGGA AGCCCGCACG
CTGATGCTGG CCTCCAACAA CGTGCTGTTC CCGGCTTCGG GCGAACCGTC GATCGTTCCT
TCGCAGGACG TGGTGCTGGG TCTGTACTAC ACGACCCGCG ACCGCATCAA CGGCAAGGGC
GAGGGCCTGA TCTTCTCCGA CATCGGTGAA GTGCAGCGCG CGCTCGACGC CAACGAAGTC
GAACTCACCG CCAAGGTGGC AGTGCGCATC ACGGAGTACA CCAAGGACAA GGAAACCGGC
GAATTCACGC CGTCGACCTC GCTGGTGGAC ACCACCGTGG GCCGCGCCCT GCTGTCCGAG
ATCCTGCCCA AGGGCCTGCC GTTCTCGAAC ATCAACAAGG CGCTGAAGAA GAAGGAAATC
TCCAAGCTCA TCAACGTCTC GTTCCGCAAG TGCGGCCTCA AAGAGACCGT GGTGTTCGCC
GACAAGCTGC TGCAGAACGG CTTCCGCCTG GCCACCAAGG CCGGCATCTC GATCGCCATC
GACGACATGC TGGTGCCCGC TGAAAAGCAC GGCATCATCG AGCGCTCGGC CAAGGAAGTG
AAGGAGATCG AGCAGCAGTA CGTCTCCGGT CTGGTGACCT CCGGCGAACG CTACAACAAG
GTGGTGGACA TCTGGGGCAA GGCCGGCGAC GAAGTGTCGA AGGTCATGAT GGCCAAGCTC
TCGAAGCAGA AGGTCATCGA CCGCCACGGC AAGGAAGTGG AGCAGGAGTC GTTCAACTCC
ATCTACATGA TGGCCGACTC CGGCGCCCGC GGTTCCGCAG CGCAGATCCG CCAGGTGGCC
GGCATGCGCG GCCTGATGGC CAAGCCGGAC GGCTCGATCA TCGAGACGCC CATCACCGCG
AACTTCCGCG AAGGCCTGAA CGTGCTGGAG TACTTCATCT CCACCCACGG TGCCCGAAAG
GGCCTGGCCG ACACGGCGCT GAAGACGGCG AACTCGGGCT ACCTGACCCG CCGCCTGGTC
GACGTGACGC AAGACCTGGT CGTGACCGAG CAGGACTGCG GCACGCACGG CGGCTACCTG
ATGCGCGCCA TCGTCGAAGG CGGTGAAGTC ATCGAATCGC TGCGCGACCG TATCCTCGGC
CGCTCGGCTG CCGACGACGT GCTGCACCCG GAAAACCGCT CGGTGCTGCT GAAGGCCGGC
GAGATGTTCG ACGAGGACAA CATCGAAGAA CTCGAGGCGC AAGGCGTCGA CGAGGTCAAG
GTGCGTACCG CGCTGACCTG CGAAACCCGC TTCGGCATCT GCGCGACCTG CTACGGCCGC
GACCTGGGCC GCGGCGGCCT GATCAACATC GGCGAAGCCG TCGGTGTGAT CGCTGCGCAG
TCCATCGGCG AACCCGGCAC GCAGCTCACG ATGCGTACCT TCCACATCGG TGGTGCGGCA
TCGCGTGCGG CGGTGGCCTC GAGCGTCGAA GCCAAGTCCA ACGGCGTGAT CGGCTTCAAC
GCCACGATGC GCTACGTGAC CAACAGCAAG AACGAGCTGG TGGTGATTGC ACGTTCGGGC
GAGATCGTCA TCCATGACGA ACACGGCCGC GAGCGCGAAC GCCACAAGGT GCCGTACGGC
GCGATCCTGG CGGTCAAGGC CGACCAGCAG ATCAAGGCCG GCCACGTGCT CGCCAACTGG
GATCCGCTGA CGCGCCCGAT CATCACGGAA TTCGCCGGCA AGACGCAGTT CGAGAACGTG
GAAGAAGGCC TCACCGTCGC CAAGCAGGTG GACGAAGTGA CCGGCCTGTC GACCCTGGTC
GTGATCGATC CGAAGCGCCG CGGCGCTGCC AAGGTCGTGC GCCCGCAGGT GAAGCTCATC
GACGCCTCCG GCGCCGAAGT GAAGATCCCG GGCACCGACC ACTCGGTGAC GATCGGCTTC
CCGATCGGCG CCCTGGTGCA GATCCGCGAC GGCCAGGACG TGGGCCCCGG CGAAGTGCTG
GCGCGTATTC CGGTCGAAGG CCAGAAGACC CGCGACATCA CCGGCGGTCT GCCGCGCGTT
GCCGAGCTGT TCGAAGCCCG TTCGCCGAAG GACAAGGGCA TGCTGGCCGA AATGACCGGT
ACCGTGTCGT TCGGCAAGGA AACCAAGGGC AAGATCCGCC TGCAGATCAC CGATCCCGAA
GGCACCGTCT GGGAAGACCT CGTGCCGAAG GAAAAGAACA TCCTGGTGCA CGAAGGCCAG
GTGGTGAACA AGGGCGAAAG CGTGGTCGAC GGCCCGGCGG ACCCGCAGGA CATCCTGCGC
CTGCTGGGTT CGGAAGAACT CGCGCGCTAC ATCGTGGACG AAGTGCAGGA CGTGTACCGC
CTGCAGGGTG TGAAGATCAA CGACAAGCAC ATCGAGGTGA TCGTTCGCCA GATGCTGCGC
CGCGTCGTGG TCGACAACAT CGGCGAGACC GGCTACATCT CCGGCGAACA GGTCGAACGC
AGCGAAATGC TCAACACCAA CGACGCCCTG CGCGCCGAAG GCAAGATCCC CGCGACGTTC
ACCAACCTGC TGCTGGGTAT CACGAAGGCG TCGCTGTCGA CCGACTCGTT CATCTCTGCC
GCTTCGTTCC AGGAAACGAC GCGCGTGCTG ACCGAAGCCG CGATCATGGG CAAGCGCGAC
GAGCTGCGCG GCCTGAAGGA AAACGTCATC GTCGGCCGCC TGATCCCCGC GGGCACCGGC
ATGGCCTACC ACCAGGCGCG CAAGGCCAAG GATCAGATGG ACGAGGCCGA GCGCCGCGCC
ATCGCCGAAT CCGAAGCCGC CGAACTGGCC GGTTCGACCA GCGATGTTTC CACCACGGCC
GACGCCAGCG AAGGCGCCGC GTCCGAATAA
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| Protein sequence | MKSLLDLFKQ FTPDEHFDAI KIGMASPEKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLAAP CAHIWFLKSL
PSRLGLVLDM TLRDIERVLY FEAYVITDPG MTPLKKFGIM SEDDYDAKRK EYGDEFVAKM
GAEGIKDLLE GIELDSEIER LRGDLTGSEV KVKKNSKRLK VLEAFRKSGI KPEWMVLDVL
PVLPPDLRPL VPLDGGRFAT SDLNDLYRRV INRNSRLRRL LELKAPEIIA RNEKRMLQEA
VDSLLDNGRR GKAMTGANKR ALKSLADMIK GKSGRFRQNL LGKRVDYSGR SVIVVGPTLK
LHQCGLPKLM ALELFKPFIF SRLEAMGIAT TIKAAKKEVE SGTPVVWDIL EEVIKEHPVM
LNRAPTLHRL GIQAFEPILI EGKAIQLHPL VCAAFNADFD GDQMAVHVPL SVEAQMEART
LMLASNNVLF PASGEPSIVP SQDVVLGLYY TTRDRINGKG EGLIFSDIGE VQRALDANEV
ELTAKVAVRI TEYTKDKETG EFTPSTSLVD TTVGRALLSE ILPKGLPFSN INKALKKKEI
SKLINVSFRK CGLKETVVFA DKLLQNGFRL ATKAGISIAI DDMLVPAEKH GIIERSAKEV
KEIEQQYVSG LVTSGERYNK VVDIWGKAGD EVSKVMMAKL SKQKVIDRHG KEVEQESFNS
IYMMADSGAR GSAAQIRQVA GMRGLMAKPD GSIIETPITA NFREGLNVLE YFISTHGARK
GLADTALKTA NSGYLTRRLV DVTQDLVVTE QDCGTHGGYL MRAIVEGGEV IESLRDRILG
RSAADDVLHP ENRSVLLKAG EMFDEDNIEE LEAQGVDEVK VRTALTCETR FGICATCYGR
DLGRGGLINI GEAVGVIAAQ SIGEPGTQLT MRTFHIGGAA SRAAVASSVE AKSNGVIGFN
ATMRYVTNSK NELVVIARSG EIVIHDEHGR ERERHKVPYG AILAVKADQQ IKAGHVLANW
DPLTRPIITE FAGKTQFENV EEGLTVAKQV DEVTGLSTLV VIDPKRRGAA KVVRPQVKLI
DASGAEVKIP GTDHSVTIGF PIGALVQIRD GQDVGPGEVL ARIPVEGQKT RDITGGLPRV
AELFEARSPK DKGMLAEMTG TVSFGKETKG KIRLQITDPE GTVWEDLVPK EKNILVHEGQ
VVNKGESVVD GPADPQDILR LLGSEELARY IVDEVQDVYR LQGVKINDKH IEVIVRQMLR
RVVVDNIGET GYISGEQVER SEMLNTNDAL RAEGKIPATF TNLLLGITKA SLSTDSFISA
ASFQETTRVL TEAAIMGKRD ELRGLKENVI VGRLIPAGTG MAYHQARKAK DQMDEAERRA
IAESEAAELA GSTSDVSTTA DASEGAASE
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