Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0588 |
Symbol | rpoB |
ID | 7973572 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 640943 |
End bp | 645067 |
Gene Length | 4125 bp |
Protein Length | 1374 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644791195 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_002942517 |
Protein GI | 239813607 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.71897 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCCAAT CGTCCGCGTA CAGTTACACC GAACGCAAGC GCATCCGAAA AAGTTTCGGC AATCGCGACA GCGTCGTAGA AATCCCCTAC CTGCTGCAGA TGCAGAAAGA CGCGTACACC GCGTTCCTGC AAGCCGGCAT TCCTCCCAAA CAGCGCACCG TCGAAGGCCT GCAGGCCGCG TTCGACGCTG CCTTCCCGAT CGTCTCGCAC AATGGTTTTG TCGAGATGAA GTTCCTCGAG TACAACCTCG CGAAGCCGGC TTTCGACGTG CGCGAGTGCC AGACCCGCGG CCTGACCTTC GCCTCGGCCG TGCGCGCCAA GGTCCAGCTC ATCATCTATG ACCGCGAGTC GTCGACCTCG CAGTCGAAGG TGGTCAAGGA AGTGAAGGAA CAAGAGGTCT ACATGGGCGA AGTGCCGCTC ATGACCGACA AGGGTTCGTT CATCATCAAC GGCACCGAGC GCGTGATCGT CTCGCAGCTG CACCGTTCGC CGGGCGTGTT CTTCGAACAC GACAAGGGCA AGACGCACAG CTCGGGCAAG CTGCTGTTCT CGGCCCGCGT GATTCCCTAC CGCGGTTCGT GGCTCGACTT CGAGTTCGAC CCGAAGGACA TGCTGTACTT CCGCGTCGAC CGCCGCCGCA AGATGCCGGT CACGATCCTG CTGAAGGCCA TCGGCCTGAA CCCGGAATCG ATCCTCGCGA ACTTCTTCGT GAACGACAAC TTCCGCCTGA TGGACAGCGG CGCGCAGATG GAATTCGTTC CCGAGCGCCT GCGCGGCGAA GTCGCGCGCT TCGACATCAC CGACAAGTCG GGCAAGGTCG TGGTCGCCAA GGACAAGCGC GTGACCGCGC GCCACACGCG CGAGCTCGAG CAGTCGGGCA CCACGCACAT CAGCGTGCCG GAAGACTTCC TGGTCGGCCG CGTCATTGCC CGCAACATCG TCGATGCCGA CTCCGGCGAG ATCCTGGCCA AGGCCAACGA CGAACTGACC GAAGCACTGC TCAAGAAGCT GCGCACGGCC GGCGTGCAGG ACATCCAGGT GATCTACACC AACGAACTCG ACCAGGGCGC GTACATCTCG CAGACCCTGC GCATCGACGA GACGGTGGAC GAATTCGCCG CCCGCGTGGC CATCTACCGC ATGATGCGCC CCGGCGAGCC GCCGACGGAA GACGCGGTGC AGGCCCTGTT CCAGCGCCTG TTCTACAACC CGGACACCTA CGACCTGTCG CGCGTGGGCC GCATGAAGTT CAACGCCAAG GTCGGCCGCG ACGAATCGAC CGGCCCGATG GTGCTGACCA ACGAAGACAT CCTGGCCGTG GTCAAGATCC TCGTGGACCT GCGCAACGGC AACGGCGAAG TCGACGACAT CGACCACCTG GGCAACCGCC GCGTGCGTTG CGTGGGCGAA CTGGCCGAGA ACCAGTACCG CACCGGCCTC GCCCGCATCG AGAAGGCCGT GAAGGAGCGT CTGGGCCAGG CCGAGCAAGA GCCGCTGATG CCGCACGACC TGATCAACAG CAAGCCGATC TCGGCCGCGC TGAAGGAATT CTTCGGTGCT TCGCAGCTGT CGCAGTTCAT GGACCAGACG AATCCGCTGT CCGAAATCAC CCACAAGCGC CGCGTGTCGG CCCTTGGCCC GGGTGGTCTG ACGCGCGAGC GTGCCGGCTT CGAAGTGCGC GACGTGCACG TCACCCACTA CGGCCGCGTG TGCCCGATCG AAACGCCTGA AGGCCCGAAC ATCGGCCTGA TCAACTCGCT GGCCCTGTAC GCCCGCCTGA ACGAATACGG CTTCATCGAG ACGCCGTACC GCCGCGTGGT CGACAGCAAG GTCACCAACG AGATCGACTA CCTGTCGGCC ATCGAGGAAG GCAAGTACGT CATCGCCCAG GCCAATGCGG TCCTGGACAA GGAAGGCAAG CTGACCGGCG ACCTGGTCTC CGCGCGTGAA GCCGGCGAAT CGATCCTGGT GGGTGCCGAG CGCATCCAGT ACATGGACGT GTCGCCCGCG CAGATCGTGT CGGTGGCTGC CTCGCTCGTG CCCTTCCTCG AGCACGACGA CGCGAACCGC GCGCTGATGG GCGCCAACAT GCAGCGCCAG GCGGTGCCCG TGCTGCGCCC CGAGAAGCCG ATGGTCGGCA CCGGTATCGA GCGCGTCTCC GCGGTCGACT CCGGCACCGT GGTCACGGCC ACCCGCGGCG GTATCGTCGA TTACGTCGAC GCGACCCGCA TCGTGGTGCG CGTGAACGAC GCCGAAGCGG CAGCCGGTGA AGTCGGTGTG GACATCTACA ACCTGATCAA GTATCAGCGT TCGAACCAGA ACACCAACAT CCACCAGCGC CCGATCGTCA AGCGCGGCGA CAAGATCGCC AAGGGCGACG TGGTGGCCGA CGGTGCATCG ACCGACCTCG GCGAACTGGC CCTCGGCCAG AACATGCTGA TCGCGTTCAT GCCCTGGAAC GGCTACAACT TCGAAGACTC GATCCTGATC TCGGAACGCG TCGTCGCGGA AGACCGCTAC ACCTCGATCC ACATCGAGGA ACTGGTGGTG ATGGCCCGCG ACACCAAGCT CGGTGCCGAG GAAATCACGC GCGACATCCC GAACCTGGCC GAGCAGCAGC TCAACCGCCT GGACGAGTCC GGCATCATCT ACGTGGGTGC CGAAGTGCAG CCGGGCGACA CGCTGGTGGG CAAGGTCACG CCGAAGGGCG AGACCACGCT GACGCCAGAA GAGAAGCTGC TTCGCGCCAT CTTCGGCGAG AAGGCTTCCG ACGTGAAGGA CACCTCGCTG CGCGTGGACC AGGGCTCGCA AGGCACCGTG ATCGACGTGC AGGTGTTCAC CCGCGAAGGC ATCACGCGCG ACAAGCGCGC CCAGCAGATC ATCGACGACG AGCTCAAGCG CTTCCGCCTC GACCTGAACG ACCAGCTTCG CATCGTCGAA GCCGACGCGT TCGACCGTAT CGAGAAGCTC CTGACCGGCA AGGTTGCCAA CGGCGGCCCG AACAAGCTGG CCAAGGGCAC CAAGCTCGAC AAGGCCTACC TGTCGTCGGT CGAGAAGTTC CACTGGTTCG ACATCCGCCC GGCGGACGAC GAAGTGGCCA CGCAGCTCGA GTCGATCAAG AACTCGCTGG AGCAGACGCG CCATAGCTTC GACCTCGCGT TCGAGGAAAA GCGCAAGAAG CTCACGCAGG GCGACGAGCT GCCCGCGGGC GTGCTCAAGA TGGTCAAGGT CTACCTGGCC GTCAAGCGCC GCCTGCAACC CGGCGACAAG ATGGCCGGCC GCCACGGCAA CAAGGGTGTG GTGTCGAAGA TCGTTCCGGT CGAAGACATG CCCCACATGG CCGACGGCAC GCCGTGCGAC ATCTGCCTGA ATCCGCTGGG CGTGCCTTCG CGGATGAACG TGGGCCAGGT GCTCGAAGTG CACCTGGGCT GGGCCGGCAA GGGCATCGGC CACCGCATCG GCGACCTGCT GCAGCAGGAG GCCAAGGTGG CCGAGCTGCG CAAGTTCATG GAGCAGCTGT ACAACGGCTC GGGCCGTCCG GAAGACCTCA GCCAGCTGAG CGACTCCGAC GTGCTCGCCA TGGCAGCCAA CCTGCAGAGC GGTGCGACCT TCGCCACGCC GGTGTTCGAC GGCGCCTCGG AAGAGGAAAT CCGCGGCATG CTGAAGCTCG CCTATCCGGA CGACATCGCC AAGCTCAAGG GCCTGACCGA GACGCGCACG CAGGCCTACC TGTACGACGG CCGCACCGGC GACCAGTTCG AGCGTCCCGT CACCGTCGGC TACATGCACT TCCTGAAGCT GCACCACCTG GTGGACGACA AGATGCACGC CCGTTCGACC GGACCGTACT CGCTCGTTAC CCAGCAGCCG CTGGGCGGCA AGGCGCAGTT CGGCGGCCAG CGTTTCGGCG AAATGGAAGT GTGGGCGCTG GAAGCCTACG GCGCCGCCTA CGTGCTGCAG GAAATGCTGA CGGTGAAGTC CGACGACGTG CAAGGCCGTA CCAAGGTGTA CGAGAGCATC GTCAAGGGCG AACACTCCAT CGAAGCCGGC ATGCCGGAAT CGTTCAATGT GCTGGTCAAG GAAATTCGTT CGCTGGGGCT CGACATCGAG CTCGAGCGTT CTTAA
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Protein sequence | MAQSSAYSYT ERKRIRKSFG NRDSVVEIPY LLQMQKDAYT AFLQAGIPPK QRTVEGLQAA FDAAFPIVSH NGFVEMKFLE YNLAKPAFDV RECQTRGLTF ASAVRAKVQL IIYDRESSTS QSKVVKEVKE QEVYMGEVPL MTDKGSFIIN GTERVIVSQL HRSPGVFFEH DKGKTHSSGK LLFSARVIPY RGSWLDFEFD PKDMLYFRVD RRRKMPVTIL LKAIGLNPES ILANFFVNDN FRLMDSGAQM EFVPERLRGE VARFDITDKS GKVVVAKDKR VTARHTRELE QSGTTHISVP EDFLVGRVIA RNIVDADSGE ILAKANDELT EALLKKLRTA GVQDIQVIYT NELDQGAYIS QTLRIDETVD EFAARVAIYR MMRPGEPPTE DAVQALFQRL FYNPDTYDLS RVGRMKFNAK VGRDESTGPM VLTNEDILAV VKILVDLRNG NGEVDDIDHL GNRRVRCVGE LAENQYRTGL ARIEKAVKER LGQAEQEPLM PHDLINSKPI SAALKEFFGA SQLSQFMDQT NPLSEITHKR RVSALGPGGL TRERAGFEVR DVHVTHYGRV CPIETPEGPN IGLINSLALY ARLNEYGFIE TPYRRVVDSK VTNEIDYLSA IEEGKYVIAQ ANAVLDKEGK LTGDLVSARE AGESILVGAE RIQYMDVSPA QIVSVAASLV PFLEHDDANR ALMGANMQRQ AVPVLRPEKP MVGTGIERVS AVDSGTVVTA TRGGIVDYVD ATRIVVRVND AEAAAGEVGV DIYNLIKYQR SNQNTNIHQR PIVKRGDKIA KGDVVADGAS TDLGELALGQ NMLIAFMPWN GYNFEDSILI SERVVAEDRY TSIHIEELVV MARDTKLGAE EITRDIPNLA EQQLNRLDES GIIYVGAEVQ PGDTLVGKVT PKGETTLTPE EKLLRAIFGE KASDVKDTSL RVDQGSQGTV IDVQVFTREG ITRDKRAQQI IDDELKRFRL DLNDQLRIVE ADAFDRIEKL LTGKVANGGP NKLAKGTKLD KAYLSSVEKF HWFDIRPADD EVATQLESIK NSLEQTRHSF DLAFEEKRKK LTQGDELPAG VLKMVKVYLA VKRRLQPGDK MAGRHGNKGV VSKIVPVEDM PHMADGTPCD ICLNPLGVPS RMNVGQVLEV HLGWAGKGIG HRIGDLLQQE AKVAELRKFM EQLYNGSGRP EDLSQLSDSD VLAMAANLQS GATFATPVFD GASEEEIRGM LKLAYPDDIA KLKGLTETRT QAYLYDGRTG DQFERPVTVG YMHFLKLHHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYVLQ EMLTVKSDDV QGRTKVYESI VKGEHSIEAG MPESFNVLVK EIRSLGLDIE LERS
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