| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0585 |
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| Symbol | rplA |
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| ID | 7973569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 638789 |
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| End bp | 639487 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791192 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_002942514 |
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| Protein GI | 239813604 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAGA TCACCAAGAA GCAAAAAGCG CTCGCAGGCA AGGTCGACAG CAACAAGCTG
TACCCGCTGG CTGACGCAAT CGGCATCGTG AAGGAAGCCG CCACCGCCAA GTTCGACGAA
TCGATCGACG TGGCCGTGCA GCTGGGCATC GACGCGAAGA AGTCGGACCA GGTCGTGCGT
GGCGCCGTCG TGCTGCCCAA CGGCACCGGC AAGACCAAGC GCGTGGCTGT GTTCGCCCAG
GGCGCCAAGG CTGAAGAAGC CAAGGCCGCC GGCGCCGACA TCGTCGGCAT GGACGACCTG
GCTGCCATGG TCAAGGCTGG CGACATGCCT TTCGACGTCG TGATTGCCGC TCCTGACGCG
ATGCGCGTGG TCGGTACGCT CGGCCAGATC CTCGGCCCGC GCGGTCTGAT GCCCAACCCC
AAGGTTGGCA CGGTGACCCC GGACGTCGCC ACGGCCGTGA AGAACGCCAA GGCTGGCCAG
GTCCAGTTCC GCGTCGACAA GGCCGGCATC GTGCACGGCA CGATCGGCCG CCGCTCGTTC
GACAACGACA AGCTGCAAGG CAACCTCGCC GCGCTGATCG ACGCTCTGGT CAAGGCCAAG
CCGGCGACCA GCAAGGGCGT GTACCTGCGC AAGGTGGCTG TGTCGTCGAC CATGGGCCTG
GGTGTCCGCG TGGACACGCA GACCATCGCG GCGAGCTAA
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| Protein sequence | MAKITKKQKA LAGKVDSNKL YPLADAIGIV KEAATAKFDE SIDVAVQLGI DAKKSDQVVR
GAVVLPNGTG KTKRVAVFAQ GAKAEEAKAA GADIVGMDDL AAMVKAGDMP FDVVIAAPDA
MRVVGTLGQI LGPRGLMPNP KVGTVTPDVA TAVKNAKAGQ VQFRVDKAGI VHGTIGRRSF
DNDKLQGNLA ALIDALVKAK PATSKGVYLR KVAVSSTMGL GVRVDTQTIA AS
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