| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0558 |
|---|
| Symbol | |
|---|
| ID | 7972968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 617453 |
|---|
| End bp | 618451 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644791161 |
|---|
| Product | AIR synthase related protein |
|---|
| Protein accession | YP_002942487 |
|---|
| Protein GI | 239813577 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2144] Selenophosphate synthetase-related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATG TCCGCGCCAT CGCCGAAGCA CTGCGCGCCA CGCGCGGCTT CGCCCACAAG
CGCGACATCA GCGACGTGGT GTCGGCGCTC GGCCGGTCGC TGCCCGGCGG CCATGCCGCG
CTCGCGCAGG CCGTGCCCAT CGGCGACGAC TGTGCGGCCA TCCCCGACGG CCACGGCGGC
TACCTGCTGT TCGCGATCGA AGGCATGGTG GAAGACTTCA TCGTGCGCAT GCCGTGGTTC
GCGGGCTACT GCGGCGTGAT GGTCAACGTG AGCGACATCT ATGCGATGGG CGGCCGCCCC
ACGGCCGTGG TCGATGCGCT GTGGAGCACC GGCATGCACC CGGCCGACGA GGTGCTGCGC
GGCATGGCGG AAGCCTCGGT GCGCTACGGC GTGCCGGTGG TGGGCGGCCA CAGCAACAAC
CGCAGCGAAC GGCCGCAGCT CGCGGTCGCG ATCCTCGGCC ACGCACGCAA GCTGCTCACC
AGCTTCGACG CCAGGCCCGG CGACCTGCTG GTGATGGCGG CCGACCTGCG CGGCGCCTAC
GAGGAGCCCT TTCCCTACTG GAACGCGTCG ACCACGGCGC CGGCCGCGCG GCTGCGCGCG
GACCTCGAAC TGCTGCCCTC CATTGCGGAA GAGGGCCTGT GCCGCGCCGC GAAGGACATC
AGCATGGCCG GCGCGGTCGG TACCGCGATG ATGCTGCTCG AATGCTCGGG CGTCGGCGCG
CGCATCGACC TCGATGCACT GCCCAGGCCC GGCGGCGTGC CGCTGCTGCG CTGGCTTTCT
TCTTTTCCGA GCTACGGATT CGTGCTCAGC GTGGCGCCTT CGCAGGTTGC GCCGGTGCTC
GGCCGCTTTG CCGCGCGCGA CATCGCCTGC GCGGTGGTCG GCGAGGTCGA TGCGACGCGG
CAGGTGCGGC TGCAGGCCGG CGGCGACGAG GCCCTGCTGT GGGACTTCGG CCGCGATGCC
TTCATCCAGC CGCCGCAGGA GGCGCTCGCA TGCCCGTGA
|
|---|
| Protein sequence | MTDVRAIAEA LRATRGFAHK RDISDVVSAL GRSLPGGHAA LAQAVPIGDD CAAIPDGHGG
YLLFAIEGMV EDFIVRMPWF AGYCGVMVNV SDIYAMGGRP TAVVDALWST GMHPADEVLR
GMAEASVRYG VPVVGGHSNN RSERPQLAVA ILGHARKLLT SFDARPGDLL VMAADLRGAY
EEPFPYWNAS TTAPAARLRA DLELLPSIAE EGLCRAAKDI SMAGAVGTAM MLLECSGVGA
RIDLDALPRP GGVPLLRWLS SFPSYGFVLS VAPSQVAPVL GRFAARDIAC AVVGEVDATR
QVRLQAGGDE ALLWDFGRDA FIQPPQEALA CP
|
|---|
| |