Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0528 |
Symbol | |
ID | 7972938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 582296 |
End bp | 583375 |
Gene Length | 1080 bp |
Protein Length | 359 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644791131 |
Product | type VI secretion protein, VC_A0111 family |
Protein accession | YP_002942457 |
Protein GI | 239813547 |
COG category | [S] Function unknown |
COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGGGACC CGGCAGATTC TGTAGCCGGG AGAGTCGACA CCGCGCTGCG CGCATGGTCG GCCGAGCCGT GGTCCTTCGA CTATTTTGCG GTGCTGCGCC GGCTGGAGTC GGTGGCCGCG ACCACGCCGC GCTGGGGCCG TGCCCTGCTG CCGAGCGCGG AGCCGGTGCG CGTGGGACAG GAGCCGTCGC TGTCGTTCGC GCCGGCCAGC TTCAGCCGCT TCGAGCCGGC CAGCGCCCAC TCGCCGCCGC GCCTGCGCCA GCACTTCTTC AGCTATGTCG GGCCCAACGG TCCGCTGCCG GTGCACCTGA GCGACTTCAT CCGCGAGCGC AGCCTGAACC ATGGCGACCC GACCTGGCTG GCCTTTCTCG ACAGCTTTCT GCACCGCTTC TCGCTGCACT TCTACCGCGC CTGGGCGCAG GCGCGGCCCG CGGTGGCGCT CGACCGGCCG GGCGAGGACC GCTTCCGCCT GCAGGTTGGC GCGTTCGTGG GCATCGGCAC GCCGGGCCGC ATCGAGCGCG ACGAGGTGCA CGACGATGCG CGCCTGCATT TCTCGGGCTG GCTCGCGCGC CGCGTGCACA ACGCCGAGAG CGTGGAAGCG GTGCTGTGCA GCTACTTCGG CGTGCCCGTG AAGCTGGAGC GCTGGGTCGG CCACTGGATG AGCCTGCCCG CGGGCGAGCT CACGCGGCTG GGGCAGGGCG AGAGTTCGCG TTCGATGGGC ATGGGCGCGA TGCTCGGCAC GCGCGCGTGG GACCGGCAGC ACCGCGTGCG CCTGCACATC GGCCCGCTCA CGCTCGCGCA GTACCGCATG TTCCTGCCGA CCGGCAACGC GCAGCCGGTG CTGCAGCGCT GGATGCAGCA GCTGCTCGGC GACGAACTCG AATGGGACGC CGAGCTGGTG CTCGAGACGA CGCAGGTGCC CGCCACGCGC CTTGGCCAGG CCAAGGGCAA CGCGCCGCGC CTGGGCTGGG TCTCGTGGCT CGGCCAGCGC ACGCGTGCCA AGGATGCGGC GGACGTGCGC ATCGGCAACC GCCCGATGAC CGCCCGCAGC GCCCAGGCCA CCGTGGGAGC CGCCGCATGA
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Protein sequence | MRDPADSVAG RVDTALRAWS AEPWSFDYFA VLRRLESVAA TTPRWGRALL PSAEPVRVGQ EPSLSFAPAS FSRFEPASAH SPPRLRQHFF SYVGPNGPLP VHLSDFIRER SLNHGDPTWL AFLDSFLHRF SLHFYRAWAQ ARPAVALDRP GEDRFRLQVG AFVGIGTPGR IERDEVHDDA RLHFSGWLAR RVHNAESVEA VLCSYFGVPV KLERWVGHWM SLPAGELTRL GQGESSRSMG MGAMLGTRAW DRQHRVRLHI GPLTLAQYRM FLPTGNAQPV LQRWMQQLLG DELEWDAELV LETTQVPATR LGQAKGNAPR LGWVSWLGQR TRAKDAADVR IGNRPMTARS AQATVGAAA
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