| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0516 |
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| Symbol | |
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| ID | 7972926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 565903 |
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| End bp | 569502 |
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| Gene Length | 3600 bp |
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| Protein Length | 1199 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791119 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_002942445 |
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| Protein GI | 239813535 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAGA AAATCTTCGG CTTCCTGTTC AGCCCGCTGC TGCTGACGCT GCTGGCGCTG
GTCATCGTCG CGCTCCTGAT CTGGTGGATC GGCCCGCTGG TGAAGATCGG CGCGTGGGTG
CCGCTCGAAA GCGAGCTCGC ACGCGCGCTG CTGATCGGGG CCATCGTGCT CGTCGTGGTG
CTGCGCGCGA TCTACCGCCG CTGGCGCGCG CGCCGTGCGA GCCAGCACCT GACCGACGGC
CTCATGAAGG CGCCCGCCGC CAAGGCCGAT GCGCCGGTCA ACGGCGAGCA GAAGATCCTG
GACACGCGCT TCAGCGAAGC CGTGGCCACG CTCAAGCAGA TGCGTCTGCA TGCCGCGGGC
AAGAAGCCCG GCTGGCGCGA CTGGCTCTCC ATTTCCGGCG GCAGCTACCT GTACGACCTG
CCTTGGTACG TGTTCATCGG CGCGCCTGGC GCGGGCAAGA CCACGGCGCT GGTCAACTCG
GGCCTCTCGT TCCCGCTGGC CGAGAAGTTC GGCCCCGGCG CGATCCGCGG CGTGGGTGGC
ACGCGCAACT GCGACTGGTG GTTCACCGAC GAGGCCGTGC TCATCGACAC CGCCGGCCGC
TACACCACGC AGGACAGCCA CCAGTCGGAA GACAAGAGCG CGTGGGAGGG CTTCCTCGGC
CTGCTCAAGA AGGCGCGTCC GCGCCGGCCG CTCAACGGCG TGTTCCTCAC GGTGAGCGTG
GCCGACCTGC TGAGCCAGGG CCCGGAGCAG CGCACGCAGC TGGCCGCGTC CATCCGCGCG
CGGCTGCTCG AGCTCGATGC GAAGCTCACC ACGCGGCTGC CGGTGTATGT GCTGGTCACC
AAGAGCGACC TGCTCTATGG CTTCACCGAC TACTTCGACG ACCTCGGCAA GGAGCAGCGC
GCGCAGGTCT TCGGCTTCAC GCTGGCGGCC GACGAGAACG TGCAGGCCGA CGAGAAGGGC
CTGTCCACCG CCTTCCACCG CGAGTTTGCG CTGCTGCACA ACCGCGTCAA CGACGGGCTC
ATCGCACGCA TGCAGCGCGA GACCGACGGC ACGCGGCGCG CGGCGATCTT CGGCTTTCCG
GCGCAGTTCG GCTCCATCGG CTCGATGCTG TCGGACCTGC TCGACCAGGT GTTCACCGGC
TCGCGCTTCG CGCAGCCGCC GTGGGTGCGC GGCGTGTACT TCACCAGCGG CACGCAGGAA
GGCAGCCCGA TCGACCGCGT GATGGGCAGC CTCGCGCGCA GCTTCGGCAT CGAGCGCGCG
ATGCTCGCGC CGCAGAAGTC CAGCGGCCGC AGCTACTTTC TCACTGCGCT GCTGCGCGAG
GTGGTGTTCC CCGAGCAGCG CCTGGCCGGC GCCAACGTGA AGCTGGAGCG CCGTCGCCAT
GCGCTGCGCA TGGCGGGCGT GGCGGCCATG ACGCTGGTCA CGCTCGCGCT GCTCGCGGGC
TGGGGCTACA GCACGCTGCA GAACCTCAAC TACCTGAAGT CGGTCGAGGC GCGCGTCGAG
CCCGCGCGCC AGACCCTCGC GGCCCTGCCT TCGCGGGTGC AGAACCTGGT CGAGGTGGCG
CCGGTGCTGC AGGGCCTGCG CGACATCTGG AAGACACCCG ACAACCGCCA GGGCGACGAG
CCGCTGTCGA TGACGCTCGG CCTCTACCAG GGCGACAAGC TCGACGCCGC CGCCATGCTC
ACGCACCAGC GTGCGCTCAA CGACGCCTTC CTGCCGCAGA TCGCCAAGCG CATCGAGGAC
CAGCTGCGCA CCGCGCAGAA GGACAACCTC GAATACACCT ACGAGGCGCT CAAGAGCTAC
CTCATGCTCT ACCAGCCCGA GCATTTCGAT GCCGAGGCGC TCAAGGCCTG GATCACGCTC
GACTGGGCGC GCAGCCTGGA CCGCGGCATT CCCGAAGACC AGCGCCAGGC GCTCGAAGAC
CAGCTCGACG TGCTCATTGC CCAGGGCCCG CCACGCTCGC CGCTCAAGAT GGACGAGAAC
CTGGTGCGCA GCGTGCGTGC CGTGCTCGCG AGCTATCCGC TGGAGCAGCG CGTGTTCAGC
CGCCTGAAGC GCCAGCGCGC CACCAAGGAC ATTCCGGCCT TCAGCATTGC CACCGCCGCC
GGCCCCTCGG CGCCGCTGGT GTTCGAGCGC ATCAGCGGCA AGCCGCTGAC CGAAGGCGTG
CCGGGCATGT TCACCTACGA CGGTTATCAC AAGCGCTTCC AGAATGAAGT GACGGTGCTC
ACCGGCCTGC TCGCGCAGGA AGACCCGTGG GTGCTCGGGC AGGACCGCAG CGCTGCCGAC
CGCATGCGCG ACGTGGCCGC GCTCGGCGCG CTGACCGACC GCGTGCGCCG CCTCTATCTT
GCGGAGTACG TCAAGGTCTG GGAGGCGCTC CTGGCCGACG TGCGGCTGAT CCGCGCCAGC
GGGCTCGAGA AGAACATCGA GGCCGCGCGC ATTCTCTCGG GCGTGGGCTC GCCGCTTGCG
AACTTCTTGC GCGCGGTGGT GAAGGAGACC ACGCTCATTC CGGCCGACCA GCCCAAGGAC
GTGGTGAGCA AGGCCACCGC CACCGTCGCG AGCACCCGCA AGGGCCTGGA AGACCTGTTC
GGCGGCGACC CCAACAAGGC CGTGGCCAGC GGCAAGCGCA TCGAGAGCAT CGTGGACGAC
CGCTTCGAGC CGCTGCGCCG CCTGGTCACC GCGGCCGGAC CGAACCAGCC CGCGCCAATC
GACGATGCGC TCAAGCTCTT CAACGAGGTG TATGTGTACC TCACGGCCGT CGACACCGCC
GTGAAGGGGC GCACCTCGCC GCCGCCCGGC GACGTGGCCG GCAAGCTCAA GTCCGACGCG
GGCCGCCTGC CCGAGCCAGT GCGCACCATG GTGGAGAACC TGAGCCAGTC GGGCGCGGCG
CAGGCCCAGG TGGCCGAGCG CGGCAACCTG AGCCAGGACC TGCGTCCCGT GACCGACTTC
TGCAACCGCG CCATCGCGGG CCGCTACCCC TTCGTGGGCA GCAGCAAGCG CGACGTGCTG
CCCGAGGACT TCGGCCAGAT GTTCGGCGCC GGCGGCCTGA TGGACGAGTT CTTCCAGAAG
CGGCTGGCCG CGCTGGTCGA CACCAGCACC AAGCCCTGGC GCTACAAGCC CGTGGCCGAA
CGCGGCGCCG TCACCACGCA GGCGCTGGCG CAGTTCGAGC GGGCCGCGCG CATCAAGGAC
ATCTTCTTCC GCGGCGGCGG CCGAGGCCCG TCGATGCGGC TGGACTTCAA GCCGGTGGAG
ATGGATGCGG GCATCACGCA ATTCATCCTC GACGTCGACG GCCAGCTCGT GAAGTACGCG
CACGGCCCGG TGGTCCCCAT GGCCGTGCAG TGGCCCGGCC CGAAGGGCAG CTACCAGGTG
CGCATCCAGG TGAGCCCGCC TTCGGCCACC GGCAGTTCGG GCGCCGCGGT CGATGGGCCA
TGGGCGCTGT TCCGCGCGCT CGACGACGGC CAGCTCGAAG CGGGCGATGC GCCCGAGAAG
TTCTTCATCA CCTTCCAGAT CGGCGCGCGC AAGACGCGCT TCGAAGTGAC GACGAACAGC
GTGCAGCATC CGATCCGCTT GAAGGAGCTG CGCGAGTTCT CCTGTCCGGA GGGGCTGTGA
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| Protein sequence | MIKKIFGFLF SPLLLTLLAL VIVALLIWWI GPLVKIGAWV PLESELARAL LIGAIVLVVV
LRAIYRRWRA RRASQHLTDG LMKAPAAKAD APVNGEQKIL DTRFSEAVAT LKQMRLHAAG
KKPGWRDWLS ISGGSYLYDL PWYVFIGAPG AGKTTALVNS GLSFPLAEKF GPGAIRGVGG
TRNCDWWFTD EAVLIDTAGR YTTQDSHQSE DKSAWEGFLG LLKKARPRRP LNGVFLTVSV
ADLLSQGPEQ RTQLAASIRA RLLELDAKLT TRLPVYVLVT KSDLLYGFTD YFDDLGKEQR
AQVFGFTLAA DENVQADEKG LSTAFHREFA LLHNRVNDGL IARMQRETDG TRRAAIFGFP
AQFGSIGSML SDLLDQVFTG SRFAQPPWVR GVYFTSGTQE GSPIDRVMGS LARSFGIERA
MLAPQKSSGR SYFLTALLRE VVFPEQRLAG ANVKLERRRH ALRMAGVAAM TLVTLALLAG
WGYSTLQNLN YLKSVEARVE PARQTLAALP SRVQNLVEVA PVLQGLRDIW KTPDNRQGDE
PLSMTLGLYQ GDKLDAAAML THQRALNDAF LPQIAKRIED QLRTAQKDNL EYTYEALKSY
LMLYQPEHFD AEALKAWITL DWARSLDRGI PEDQRQALED QLDVLIAQGP PRSPLKMDEN
LVRSVRAVLA SYPLEQRVFS RLKRQRATKD IPAFSIATAA GPSAPLVFER ISGKPLTEGV
PGMFTYDGYH KRFQNEVTVL TGLLAQEDPW VLGQDRSAAD RMRDVAALGA LTDRVRRLYL
AEYVKVWEAL LADVRLIRAS GLEKNIEAAR ILSGVGSPLA NFLRAVVKET TLIPADQPKD
VVSKATATVA STRKGLEDLF GGDPNKAVAS GKRIESIVDD RFEPLRRLVT AAGPNQPAPI
DDALKLFNEV YVYLTAVDTA VKGRTSPPPG DVAGKLKSDA GRLPEPVRTM VENLSQSGAA
QAQVAERGNL SQDLRPVTDF CNRAIAGRYP FVGSSKRDVL PEDFGQMFGA GGLMDEFFQK
RLAALVDTST KPWRYKPVAE RGAVTTQALA QFERAARIKD IFFRGGGRGP SMRLDFKPVE
MDAGITQFIL DVDGQLVKYA HGPVVPMAVQ WPGPKGSYQV RIQVSPPSAT GSSGAAVDGP
WALFRALDDG QLEAGDAPEK FFITFQIGAR KTRFEVTTNS VQHPIRLKEL REFSCPEGL
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