Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0515 |
Symbol | |
ID | 7972925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 564578 |
End bp | 565906 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644791118 |
Product | type IV / VI secretion system protein, DotU family |
Protein accession | YP_002942444 |
Protein GI | 239813534 |
COG category | [S] Function unknown |
COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family [TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAACAC CCGATCCCTT CGCCGCCTTC GAGTCGGAGC GCACGGTCAT CAAGCCCAAG CCGCGCACGC CGGCCGGCAC GCCGCCCGCG CCGGCTCCCG CACCGTTCTT CGGCGGCGCT GATCCGACGC CGGCCGTCGA CGTCGGCGAG ATCGGCCTGC TCAATCCGCT GGTCTCGGCC GCGGGCAAGC TGCTGGTGCT GATCGGAAAG CTGCGCAACC TGGTGCAGCC GCCCAACGTG CCGGCCCTGC GCGCCTCCAC CGCCGACGCG GTGAACCAGT TCGATGCCGC CGCGCGCCGC GCCGGCGCCA GCAACGAATC GGTGCTGGCC GCACGCTACG TGCTGTGCAC CGCGCTGGAT GAAGCCGTGG CCAACACGCC CTGGGGCGTG CAGGCCGGCT GGAACAAGCA GAGCCTCTTG GTGCAGTTCC ACAACGAGAC CTGGGGCGGC GAGAAGGTGT TCCAGCTGCT CGCCAAGCTC GCGCAGGACG TGCCCACGCA CCGCCAGCTG CTGGAGCTGA TCTACAGCGT GCTCGCGCTC GGCTTCGAAG GCCGCTACCG CGTGGTCGAC AACGGCCGCG CGCAGCTCGA TTCGGTGCGC CAGCGCCTGG CCGACCTGAT CGCCAAGGAT CGCCCGCCGC TCGAAGCCGA GCTTTCGCCG CACTGGCGCG GGCAGGGCGC GGGCACGGTG CGGCTGCGCG AATCGCTGCC GCTGTGGGTG TTCGCGGCCG GCTTCGCGCT GCTGCTCGCG CTGGCCTGGT TTGGCCTGCG GCTCACGCTC AACTACCGCT CCGACACCAC CTATGCCGCG GTGTCGGGCC TGCGCGTGCC CAACCTCCAG ATCGCGCCGC CTGCCGCGCC GGCCAAGTCG CCGCGGCTCG CGCGCTTTCT CGAGCCCGAG ATCAAGCAGG GCCTGGTCAC CGTGACCGAC GAGGCCGACC GCAGCGTGGT GCGGCTGCGC GGCGATTCCT TCTTCGGCTC CGGCAGCGCC GAGCCCATGG CGGCCTCGCT GCCGGTGCTG CGCCGCATCG GCCAGGCGCT GGCCGAGGTG AAGGGCGAGG TGCTGATCAC CGGCCACTCC GACAACCAGC CGATCCGCTC GCTGCGCTAT CCCTCCAACT GGCACCTGTC GGCGGCGCGC GCCGATGCGG TGAAAGGCGC ACTCACCACG CTGGTCGAGC CGGCGCGCAT GCGCTCCGAC GGCAAGGCCG ACGCCGAGCC CGTGGCCGCC AACGACACGC CGGCCAACCG CGCGCGCAAC CGGCGGGTGG ACATCGTGCT CTTGTCCGAG CCGGACCGCG TGGCTGCCGC GGCGGGAGTG ACGAAATGA
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Protein sequence | MTTPDPFAAF ESERTVIKPK PRTPAGTPPA PAPAPFFGGA DPTPAVDVGE IGLLNPLVSA AGKLLVLIGK LRNLVQPPNV PALRASTADA VNQFDAAARR AGASNESVLA ARYVLCTALD EAVANTPWGV QAGWNKQSLL VQFHNETWGG EKVFQLLAKL AQDVPTHRQL LELIYSVLAL GFEGRYRVVD NGRAQLDSVR QRLADLIAKD RPPLEAELSP HWRGQGAGTV RLRESLPLWV FAAGFALLLA LAWFGLRLTL NYRSDTTYAA VSGLRVPNLQ IAPPAAPAKS PRLARFLEPE IKQGLVTVTD EADRSVVRLR GDSFFGSGSA EPMAASLPVL RRIGQALAEV KGEVLITGHS DNQPIRSLRY PSNWHLSAAR ADAVKGALTT LVEPARMRSD GKADAEPVAA NDTPANRARN RRVDIVLLSE PDRVAAAAGV TK
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