Gene Vapar_0466 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0466 
Symbol 
ID7970207 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp508288 
End bp509880 
Gene Length1593 bp 
Protein Length530 aa 
Translation table11 
GC content68% 
IMG OID644791069 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_002942395 
Protein GI239813485 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.292828 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAAG GGCTGTCCCT TCGCGTTTCG CAGCACCTGG CGCTCACGCC CCAACTGCAG 
CAGTCGATCC GGCTGCTGCA GCTGTCCACG CTCGAACTGA GCCAGGAAGT GGAGCAGATG
CTGGACGAGA ACCCGTTCCT CGAACGCACC GCGGAAGAAG CCGCGCGCGA GGAATTCGGG
CTCGACGCCA TCGACACGCC GGTGCCGCGC GACGAGGCCG GTGAAGCCGC CGAGGGCGAA
TTCAGCTCGG CCCCGGCCAG CAGCACGACC AGCACTTCGA GCGAAACCGC CTCCACGGCC
GAGTCCGAGG TTCCCGCCGC CGACGCCACC GAGCGCGAGC CCGACTGGGA AGGCGACGGC
ACCGTCGACA TGGCGCCCGA CGACAGCGAA TGGGGCAGCG ATGCCCCCGC GCGCCAGAAC
AACCTGGGCG ACGACGAGCG CGCCGACGCC ACCGAGCTCG CGCGCAGCCA GGAGTCGCTG
CAGTCCTTCC TGCACCGGCA GGCGCTGAGC CTGCGGCTCA ACGAGAACGA CAGCGCCGCG
CTGCGCTTCC TGATCGAATC GCTCAACGAC GACGGCTACC TGGAGGATTC GCTGCCGGCG
CTGGCCTCGG GCCTCGCGGG CGACGACAAC GACCAGTTCG ACGAGCTGGT GCACCACTTC
CAGGTGGCGC TCGGCCTGCT GCAGAGCCTG GAGCCGGCCG GCGTCGGCGC GCGCGACCTG
GGCGAATGCC TTTGCATCCA GCTGCGCGCG CTCGCCAGCG AAAGCGAGAC CGAGGAACAG
GCGCTGGTGC GCAAGACCGC CATCGCGATC TGCAAGCAGC CGATGGAGCT GCTCGCGCGG
CGCGACTTCA AGCGCCTGGC CACGCTCACG CGCACCAACG AAGAGCTGGT GCGCTCGGCG
CTGCAGGTCA TCTCGCGCCT GGAGCCCAAG CCGGGCCGCC GTTTTGTCGA TGTCGAGCGC
AACATCGTGA TTCCCGACGT GATCGTCACC AAGATCGGCC GCGGCACCAA TGCCAAGTTC
CGCGTCATGC TCAATCCCGA GGTGATGCCG CGGCTGCGCG TGCACGACAT CTATGCCGGC
GCGCTCAAGT CGCACAAGGG CGAGGGCAGC CAGGCGCTGT CGCAGCGGCT GCAGGAGGCG
CGCTGGTTCA TCAAGAACAT CCAGCAGCGC TTCGACACCA TCCTGCGCGT GAGCAACGCC
ATCGTCGAGC GGCAGAAGAG CTTCTTCGTG CACGGCGAGC TCGCGATGCG GCCCCTGGTG
CTGCGCGAGA TTGCCGACGA ACTGGGCCTG CACGAATCGA CCATCTCGCG CGTGACCACG
GCCAAGTACA TGTCCACGCC TTTCGGCACG GTCGAGCTCA AGTACTTCTT CGGCTCGGCG
CTCGGTACCG AGACCGGCGG CAATGCGTCG AGCACCGCGG TGCGCGCGCT GATCAAGCAG
TTCGTGAGCT CCGAGAGCAT CAAGAAGCCG CTGTCCGACA GCCAGATCTC CGAGATGCTC
AAGGAGCAGG GCATCGAGTG CGCGCGCCGC ACCGTGGCCA AGTACCGCGA GGCCCTGCGC
ATCGCGCCGG CCAACCTCCG CAAGGCGCTG TAG
 
Protein sequence
MKQGLSLRVS QHLALTPQLQ QSIRLLQLST LELSQEVEQM LDENPFLERT AEEAAREEFG 
LDAIDTPVPR DEAGEAAEGE FSSAPASSTT STSSETASTA ESEVPAADAT EREPDWEGDG
TVDMAPDDSE WGSDAPARQN NLGDDERADA TELARSQESL QSFLHRQALS LRLNENDSAA
LRFLIESLND DGYLEDSLPA LASGLAGDDN DQFDELVHHF QVALGLLQSL EPAGVGARDL
GECLCIQLRA LASESETEEQ ALVRKTAIAI CKQPMELLAR RDFKRLATLT RTNEELVRSA
LQVISRLEPK PGRRFVDVER NIVIPDVIVT KIGRGTNAKF RVMLNPEVMP RLRVHDIYAG
ALKSHKGEGS QALSQRLQEA RWFIKNIQQR FDTILRVSNA IVERQKSFFV HGELAMRPLV
LREIADELGL HESTISRVTT AKYMSTPFGT VELKYFFGSA LGTETGGNAS STAVRALIKQ
FVSSESIKKP LSDSQISEML KEQGIECARR TVAKYREALR IAPANLRKAL