| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0395 |
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| Symbol | |
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| ID | 7973539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 427111 |
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| End bp | 428115 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644790998 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002942324 |
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| Protein GI | 239813414 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCGCT TCCTCCTCAC GCGCGTGAGC CTGCTGGTGC CGACCTTCAT CGGCATGACG
CTGCTTGCCT TTTTCCTGAT CCGGCTGGTG CCGGGCGACC CCATCGAAAC CATGGCGGGC
GAGCGCGGGA TCGATCCCGA GCGCCATGCC CAGCTGCGCG CGGCCTACGG CTTCGACAAG
CCGGTGATCG TGCAGTACGG CATCTACATC GGCCGCGTGC TGCATGGCGA TCTCGGCAAG
TCGCTGGTCA CCCAGGAGTC GGTCGCCAAC GAGTTCCTTG CGCTGTTCCC CGCCACGGTC
GAGCTGGCCG TGTGCGCCAT TGCCTTCGCG CTGCTGCTGG GGCTGCCGGC GGGCATCCTG
GCGGCGGTGC GGCGCAATTC CATCTTCGAC CATGGCGTGA TGGCCACCTC GCTCACCGGC
TATTCGATGC CGATCTTCTG GTGGGGGCTG CTGCTGATCC TGTTCTTCTC GGTGCAGCTG
GGCTGGACGC CCGTGTCGGG CCGCATTGCG GTGCAGTACT TCGTCGAGCC TGAAACCGGC
TTCCTCTTGA TCGATGCGCT GCGCGCCGGC GACACCGGCG CCTTCTGGTC GGCGCTGCAT
CACCTCGTCC TGCCGGCCAT CGTGCTCGGC ACCGTGCCGC TCGCGGTCAT CGCGCGCATG
ACGCGCTCGG CCATGCTCGA GGTGCTGGGC GAGGACTACA TCCGCACCGC GCGCGCCAAG
GGCCTTTCGC GCCTTCGCGT GGTGGGGCTG CATGCGCTGC GCAACGCGCT GATTCCGGTG
GTCACGGTGA TCGGGCTGCA GGTGGGCGTG CTCTTCACGG GCGCGATCCT CACCGAGACC
ATCTTCTCGT GGCCCGGTGT CGGCAAGTGG CTGATCGAGG CCATCGGCCG GCGCGACTAT
CCGGTGCTGC AGGGCGGCAT GCTGCTGCTG GGCGGCATCG TGATGCTGGT CAACCTGCTG
GTCGACGTGG CCTACGGCGT CATCAATCCA CGCATCCGGC ACTGA
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| Protein sequence | MLRFLLTRVS LLVPTFIGMT LLAFFLIRLV PGDPIETMAG ERGIDPERHA QLRAAYGFDK
PVIVQYGIYI GRVLHGDLGK SLVTQESVAN EFLALFPATV ELAVCAIAFA LLLGLPAGIL
AAVRRNSIFD HGVMATSLTG YSMPIFWWGL LLILFFSVQL GWTPVSGRIA VQYFVEPETG
FLLIDALRAG DTGAFWSALH HLVLPAIVLG TVPLAVIARM TRSAMLEVLG EDYIRTARAK
GLSRLRVVGL HALRNALIPV VTVIGLQVGV LFTGAILTET IFSWPGVGKW LIEAIGRRDY
PVLQGGMLLL GGIVMLVNLL VDVAYGVINP RIRH
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