| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0387 |
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| Symbol | mnmA |
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| ID | 7973531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 419072 |
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| End bp | 420181 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644790990 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_002942316 |
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| Protein GI | 239813406 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.582851 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAGC AACGGATCGT GGTGGGACTG AGCGGCGGGG TCGATTCCGC GGTCACGGCG
CACCTGCTCA AGCAGCAGGG GCACGAGGTG GTCGGCATCT TCATGAAGAA CTGGGAAGAC
GACGACGACA GCGAATACTG CTCGTCGAAC ATCGACTTCG TGGACGCCGC CAGCGTGGCC
GACGTGCTGG GCATCGAGAT CGAGCACGTC AACTTCGCGG CCGACTACAA GGACCGCGTG
TTCGCCGAGT TCCTGCGCGA ATACAAGGCC GGCCGCACGC CCAACCCCGA CGTGCTGTGC
AATGCCGAGA TCAAGTTCAA GGCCTTCCTC GACCACGCGA TGCGCCTCGG GGCCGAGAAG
ATCGCCACCG GCCACTACGC GCGCGTGCGG CTCAATGAGA CCACCGGCCG GCACGAGCTG
CTCAAGGGGC TCGATCCCTC CAAGGACCAG AGCTATTTCC TGCACCGGCT GAACCAGGCG
CAGCTGTCCA AGACGCTGTT TCCCGTGGGC GAGCTGCACA AGACCGAGGT GCGCCGCATC
GCGGAAGAGA TCGGCCTGCC CAACGCGAAG AAAAAGGATT CGACGGGCAT CTGCTTCATC
GGCGAGCGGC CGTTCCGCGA GTTCCTCAAC CGCTACATCT CGAAGGAGCC GGGCCCCATC
AAGGACGACC GCGGCCGCAA GCTCGGCGAG CACCAGGGCC TGAGCTTCTA CACGCTGGGC
CAGCGGCAGG GGCTGGGCAT CGGCGGCGTC AAGGAGAAGG GCGCGCAGCG CGGCTCGGGC
GACCACTCGC CATGGTTCGT GGCGCGCAAG GACGTCGAGA AGAACACGCT CTGGGTGGTG
CAGGGCCATG ACCATCCCTG GCTGCTGTCC TCGGCACTCG CGGCCGGCGA CGCGAGCTGG
GTCTCGGGCG AGGCGCCCGC GCCGGGCCGC TACGGATCGA AGGCGCGCTA CCGCCAGGCC
GATGCGGCGT GCGAGCTGGA AGAAGGCGGC GGCGACCCCG CGGCCAGCTT CAGCCTGCGC
TTCGGCGAGC CGCAATGGGC CGTCACGCCG GGGCAGTCGG CGGTGCTCTA CGACGGCGAG
CGCTGCCTGG GCGGCGGGGT CATCGTCTGA
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| Protein sequence | MAKQRIVVGL SGGVDSAVTA HLLKQQGHEV VGIFMKNWED DDDSEYCSSN IDFVDAASVA
DVLGIEIEHV NFAADYKDRV FAEFLREYKA GRTPNPDVLC NAEIKFKAFL DHAMRLGAEK
IATGHYARVR LNETTGRHEL LKGLDPSKDQ SYFLHRLNQA QLSKTLFPVG ELHKTEVRRI
AEEIGLPNAK KKDSTGICFI GERPFREFLN RYISKEPGPI KDDRGRKLGE HQGLSFYTLG
QRQGLGIGGV KEKGAQRGSG DHSPWFVARK DVEKNTLWVV QGHDHPWLLS SALAAGDASW
VSGEAPAPGR YGSKARYRQA DAACELEEGG GDPAASFSLR FGEPQWAVTP GQSAVLYDGE
RCLGGGVIV
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