| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0325 |
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| Symbol | |
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| ID | 7972674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 346652 |
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| End bp | 347566 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644790928 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002942254 |
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| Protein GI | 239813344 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGACT CTTCCCGCTA CCGCTCCGTG TTCTCGCCCG GCCTGTTTGC CGGGCAAGTG
ATCCTCGTCA CGGGCGGCGG CTCGGGCATC GGCCGCTGCA CGGCGCACGA GCTTGCATCG
CTCGGCGCGC AGGTGGTGCT GGCCGGCCGC AACGCCGACA AGCTGCAGCA GGTGCAGGCC
GAGATCGCCG ATGCGGGCGG CAAGGCCAGC ATCCAGGCCT TCGACATCCG GCAGGAAGAA
GCGGTGCGCG CCGCCGTCGC CGACATCGTT GCAGCGCACG GCCGCATCGA CGGCCTCGTC
AACAACGCGG GCGGCCAGTA CCTCACGCCG CTCGCGGCCA TCTCGGCCAA GGGCTGGGAG
GCGGTGATCC ACACCAACCT CACGGGCGGT TTCCTGGTGG CGCGCGAGTG CTTCGTGCAG
AGCATGCAGG CGTATGGCGG CGCCATCGTC AACATCGTGG CCGACATGTG GGGCTCGATG
CCCCACATGG GCCACAGCGG CGCGGCGCGC GCGGGCATGG TGAGCTTCAC CGAGACCGCC
GCGCTCGAAT GGGCCGCGCG CGGCGTGCGC GTGAACGCCG TGGCACCGGG CTACATCGCG
TCGAGCGGCA TGGACCACTA CCCGCCCGAG GCCGGCGAGA TGCTGCGCGC CATGCGCGAC
ACCGTGCCCG CGGGCCGCTT CGGCAACGAG GCCGAGACCT CCGCCGCCAT CGCCTTCCTG
CTGAGCCCGG CGGCGAGCTT CATCAGCGGC AGCGTGCTGC GCGTGGACGG CGCGCGGCCG
CAGGTGCGCA TGGGCTGGCC GATGGCGCTG CCCGATGCGC AGGTGCGGCA GCGCGCCGCC
GTGCGGCCCT TCGGCGGCTT TCACCTGGCC GAGACGCCGC GCGTGTTCCG GGACGGCGGC
GAAGCAAACG ACTGA
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| Protein sequence | MNDSSRYRSV FSPGLFAGQV ILVTGGGSGI GRCTAHELAS LGAQVVLAGR NADKLQQVQA
EIADAGGKAS IQAFDIRQEE AVRAAVADIV AAHGRIDGLV NNAGGQYLTP LAAISAKGWE
AVIHTNLTGG FLVARECFVQ SMQAYGGAIV NIVADMWGSM PHMGHSGAAR AGMVSFTETA
ALEWAARGVR VNAVAPGYIA SSGMDHYPPE AGEMLRAMRD TVPAGRFGNE AETSAAIAFL
LSPAASFISG SVLRVDGARP QVRMGWPMAL PDAQVRQRAA VRPFGGFHLA ETPRVFRDGG
EAND
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