| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0324 |
|---|
| Symbol | |
|---|
| ID | 7972673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 345477 |
|---|
| End bp | 346637 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644790927 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_002942253 |
|---|
| Protein GI | 239813343 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTACA CCCACGAGCA CCTCGAGATC CAGAAGACGC TGCGCCGCTT CATCGACAGC
GAGATCAATC CGCATGTCGA TGAATGGGAA GAGGCCGAGA TCTTTCCCGC GCACGAGGTC
TTCAGGAAGC TCGGCAAGCT GGGCATGCTG GGCCTCAACA AGCCCGAGGC CTTCGGCGGC
GCCGGGCTCG ACTATTCGTA TGCGATGGCC ATGGCCGAGG CGCTCGGCCA TGTGAGCTGC
GGCGGCGTGC CGATGGCCAT TGGCGTGCAG ACCGACATGT GCACGCCCGC GCTCGCGCGC
TTCGGCAGCG ACGAACTGCG CCGCGAGTTC CTCGCGCCCG CCATCGCGGG CGAGACGGTC
GGCTGCATCG GCGTGAGCGA GCCCGGCGCG GGCAGCGACG TGGCGGGCCT CAAGAGCCAC
GCACGCAAGG ACGGCGCCGA CTACCTCATC AGCGGCCAGA AGATGTGGAT CACCAACAGC
CTGCAGGCCG ACTGGATGTG CATGCTGGTC AACACCAGCG ATGGCCCGGT GCACCGCAAC
AAGTCGCTGG TGATGGTGCC GATGGACAGC CCCGGCATCG AGAAGGCGAA GAAGATCCGC
AAGATCGGCA TGCATTCGAG CGACACGGGC CTCATCCACT TCGACAACGT GCGCGTGCCG
CAGCGCTATC GCATCGGCGA GGAGGGCCAG GGCTTCGTCT ACCAGATGCA GCAGTTCCAG
GAAGAGCGCC TGTGGGCCGC CGCGAGCTCG CTCGAACCGA TGGAAGACTG CATCGCTCAG
ACCATCGAAT GGGCGCAGCA GCGCCAGATG TTCGGCGCCA CGCTGGCCGA CCAGCAGTGG
GTTCAGTTCA AGCTGGCCGA ACTCAAGACC GAGGTGGAAG CGCTGCGCGC CCTTGCCTAC
CGCGCCTGCG ACCTGCACGT GCAGGGCCAG GACGTGCTCG AGCTGGCCTC GATGGCCAAG
CTCAAGACCG GCCGGCTCAC GCGCCAGGTG GCCGACACCT GCCTGCAGTT CTGGGGCGGC
ATGGGCTTCA CGCTGGAGAA CCGCGTCTCG CGGCTGTACC GAGACGGGCG GCTCGGCTCC
ATCGGCGGCG GCGCCGACGA AGTGATGCTG GGCATCCTCG CCAAGACGAT GGGCATCGCC
AAGCGGCCGC CGCGCGGCTG A
|
|---|
| Protein sequence | MQYTHEHLEI QKTLRRFIDS EINPHVDEWE EAEIFPAHEV FRKLGKLGML GLNKPEAFGG
AGLDYSYAMA MAEALGHVSC GGVPMAIGVQ TDMCTPALAR FGSDELRREF LAPAIAGETV
GCIGVSEPGA GSDVAGLKSH ARKDGADYLI SGQKMWITNS LQADWMCMLV NTSDGPVHRN
KSLVMVPMDS PGIEKAKKIR KIGMHSSDTG LIHFDNVRVP QRYRIGEEGQ GFVYQMQQFQ
EERLWAAASS LEPMEDCIAQ TIEWAQQRQM FGATLADQQW VQFKLAELKT EVEALRALAY
RACDLHVQGQ DVLELASMAK LKTGRLTRQV ADTCLQFWGG MGFTLENRVS RLYRDGRLGS
IGGGADEVML GILAKTMGIA KRPPRG
|
|---|
| |