| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0323 |
|---|
| Symbol | |
|---|
| ID | 7972672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 344634 |
|---|
| End bp | 345386 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644790926 |
|---|
| Product | band 7 protein |
|---|
| Protein accession | YP_002942252 |
|---|
| Protein GI | 239813342 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACTT TCGGCATCGG CACCGTCTTG CTTGTCTTGC TGGTGGTGCT GCTTTTTTCG
GCCATCTGGA TCTTTCGCGA ATACGAGCGC GGCATCGTGT TCACCCTGGG CCGCTTCTCC
AGGGTCGCGG GGCCCGGGCT GGTGATCGTG GTTCCCGCCA TCCAGCAGGT CGTGCGGGTC
GATCTGCGCA CCGTGGTGCT CGAGGTTCCG ACCCAGGACG TGATCTCGCG CGACAACGTG
TCGGTGAAGG TCAGCGCGGT GGTCTACTTC CGCATCGTCG ATGCCGAAAA GGCCATCATC
GAAGTCAGGG ATTTCTTCAA CGCGACCAGC CAGCTAGCGC AGACCACGCT GCGCTCGGTG
CTGGGCAAGC ACCAGCTGGA CGACATGCTG GCGGAGCGGG AAAAACTCAA CCTGGATGTG
CGCGAGTCGC TCGACGTGCA GACGGCTTCG TGGGGCATCA AGGTCTCCAA CGTGGAGATC
AAGCAGATCG ACCTTACCGA ATCGATGGTC CGCGCCATCG CGCGGCAGGC CGAGGCGGAG
CGTGAGCGGC GTGCCAAGGT GATCCATGCC GAAGGCGAGC TGCAGGCCTC CGAGAAGCTG
TTCCAGGCCG CGCGCGTGCT GGCGCAGGAG CCGCAGGCGA TCCAGCTGCG CTACCTGGAA
ACGCTGACGG TGATTGGCGC GGACAAGAAC ACCACCATCG TCTTCCCGCT GCCGGTGGAC
CTGCTCGCGA GCTTCCTGCA CAAGCCCGCG TAG
|
|---|
| Protein sequence | MFTFGIGTVL LVLLVVLLFS AIWIFREYER GIVFTLGRFS RVAGPGLVIV VPAIQQVVRV
DLRTVVLEVP TQDVISRDNV SVKVSAVVYF RIVDAEKAII EVRDFFNATS QLAQTTLRSV
LGKHQLDDML AEREKLNLDV RESLDVQTAS WGIKVSNVEI KQIDLTESMV RAIARQAEAE
RERRAKVIHA EGELQASEKL FQAARVLAQE PQAIQLRYLE TLTVIGADKN TTIVFPLPVD
LLASFLHKPA
|
|---|
| |