Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0213 |
Symbol | |
ID | 7971422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 224994 |
End bp | 228629 |
Gene Length | 3636 bp |
Protein Length | 1211 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644790816 |
Product | type VI secretion protein IcmF |
Protein accession | YP_002942142 |
Protein GI | 239813232 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCGCG CGATTTTCCG TTTTCTCGTG AGCCGCGACC TGTGGGTCTT TCTCGGGCTG CTGGCCGTTG CGTTCCTGAT CTGGATCATC GGCCCCGTCA TTGCGGTGGG CCGCTACCGG CCGTTCGAAA GCGAGTTCGT GCGCATCGTG GTGATCGCGC TGATGTTCGC GATCTGGATC GCGCGCGTGC TCTACCGCAA GTGGCGCGAG CGGCGCCTCA ATGCGCAGCT GCTCAACCAG CTGCGCACGC CGTCGCCCAA GGAGAAGGCC GCCAAGCCCG AGGATGCGCC CGAGATCAAG GAGCTGCAAA GCGGCTTCAC CGACGCCACG TCCATCCTGA AGAACATGCG TTTCGGCGCC GATGCCGGCG GCAAGCCCGC GGGGCGCTTC GCGCTGTTCG ACCGCCAGTA CCTGTACCAG CTGCCCTGGT ACATCTTCAT CGGCGCGCCG GGCTCGGGCA AGACCACCGC GCTGGTCAAC TCCGACCTCG ACTTCCCACT GGCCGACCAG CTCGGCAAGG CCGCGGTGCG CGGCATCGGC GGCACGCGCA ACTGCGACTG GTGGTTCACC AACGAGGCGG TGCTGATCGA CACCGCCGGG CGCTACACCA CGCACGAGAG CAACCGCGAG ACCGACGAGG GCGAGTGGAA GGGCTTCCTC GACCTGCTCA AGAAGTTCAG GCCGCGCCAG CCGATCAACG GTGCCATCCT CACCATCAGC ATTGCCGACC TGCCGCTGGC CGACGACGCG CAGCGCGCGC GCCACGCGAT GGCGCTGCGC AAGCGGCTGC TCGAACTGCG CAACGGCCTG GGCATCAATT TTCCGGTGTA CGTGCTGGTC ACCAAGACCG ACCTCTTGGC CGGCTTCAAC GAGTACTTCG GCGCGCTCGG CCGCGCCGAG CGCTCGCAGG TCTGGGGCTT CACCTTCCCG ATCGATGCCA ACCCCGCAGA CCCGGCCAAG GCCGACCTGC GCGAGCGCTT CCACCAGGAA TACAAGCTGC TGCACCAGCG CCTGGACGAG CGCCTGCCGG AACTGCTGGC GGCCGAGCCC GACCAGCTGC GCCGCGCGCA GGCCTACCTG CTGCCGCAGC AGTTCGCGAG CTTCGAGGAC ATCCTGGGCA CCTTCCTGGC CGACGTGTTC AACCCCTCGA AGTTCGAAGT CGCGCCGATG CTGCGCGGCG TGTACTTCAC CAGCGGCACG CAGGAGGGCA CGGCTTTCGA CCGCGTGATG GGCGCGATCA AGCGCTACCT GCAGGTCAAC GCGCCGCCCG CGCCGCCGCC GGGCCCGGGC AAGAGCTACT TCCTCAAGGA GCTGCTGCAG CAGGTGATCT TCCGCGACGC GGGCGTGGCC GGCACCAACC TGCGCTGGTA CCGGCGCAAG CGCGCCATCG ACCTCGCGGG CTACGGCCTC ATCGGCGTGC TGCTGGTGGT GGTGCTGGGC GCCTGCGTGA ACAGCTGGCG CAACAACCGC GACTACGTGG CCGAGGTCGA CACCAACGCC AAGGCCTTCA ACAAGGCCGC GGCGCGCGGC GAACTGCCGA CGGTGGTCGA TTCCAACAGC GACATCGCGA GCTCGCTGCC CGTGCTCGAC CGCCTGCGCG ACCTGCCCAA GTCGAGCCAT TTCGACATCG GCGATCCGCC CATGGGCTAT CGCTTCGGCC TCTACCAGGG CGAGAAGCTG CAGGCCGCGA CCGACGGCGT CTACCAGCGC GCGCTCGAAG GCGTGCTGCT GCCGCAGGCC GCGCAGCGCG TGGAGCAGGC GCTGCGCGAG GCCTCCAAGA CCGATGCCGA ATACAGCTAC GAGGCGCTCA AGGCCTACCT CATGCTGTAC GACGCGGAGC GCTACGACGC CGACTTTCTC CAGGCCTGGC TGCTCACCGA CGTGGACCGC AAGATCGGCG CCGGCCTCAC GCGCGAGCAG CGCACCAACC TCGAGTCGCA CCTGAAGGCG CTGTTCGCCG AACGCGTGGT GACCTCGCCC TTCGCCAAGG ACGACCGGCT CGTCACCGAG ACGCGCAACC GCCTGGCCGG CGTGCCGCTG GCGCAGCGCG CCTATGCGCG GCTGCGGCGC ATCCTGCTGC AGACCAGTCC GCCCAATGCC TTCAGCATCG CGGAGGCGGC GGGGGCCGAG TCGGCGCTGG TGATCAAGCG CACGAGCGGC AAGCCGCTCA CCGACGGCAT CCCGACGCTG TTCACCTACC GCGGCTACTG GGACATCTTC GACAAGCGCA TGGCCGAGAC CACGCTTGCG CTCGAACAGG AAGACCGCTG GGTGCTGCAG ATCCGCGCGC CCGGCATGGC CGACATCACC TCGCGCGAGC TGCTGCTGCG CGAGGTGCGC CGGCTCTACC TCACCGACTA CATCCGCGTC TGGGACGACT ACCTGCTCGA CGTCCGGCTG GCCGACAGCC GCTCGCTGCT GCAGAGCATC CAGATGACGC GCGTGCTCTC GACCAGCGAG TCGCCGATGT CGCGCCTCAT CCGCGGCGCG GCGCGCGAGA CCGACCTGCT GCGCAACCAC GACGAAGCCA CGCGCAGCCT GCTCGACCAG GCGCAGAACC GCGTGGCCAG CACGCGCGAG CGCATCGAGC AGCTCATCGG GCAGCCCGAC GGCAGCCAGC GCCGCAACAC CGTGCCGGAC CGCCCCGAAT CGCTGGTGGA CAACCACTTC GCGCCGCTTC GCCGCATGGT CACCGCGCCC AAGGCCGGCG GCCAGGCGCC GATCGACGCG ACGGCCGCGC TCATCAACGA GCTCTACACC TTCCTCACCG CCACCGACAC GGCATTGCGC AGCGGCAACA TCCCGCCATC GAGCGACGCG GTCACCAAGG TGCAGGCCGA GGCGGGCCGC CTGCCGGTGC CGTTCCAGGG CATGCTGAAC GACCTCTCGG CCACCGCGTC GTCCAAGGCG GCGGCGGTGA CGCGGCAGAA CATCGGGCAG AACGCGGCCG CCACCATCGG CCAGTTCTGC AGCCAGGCCA TTGCGGGGCG CTATCCGTTC TCGCGCGGCT CGAACCGCGA CGTGGCCGCC GGCGACTTCG CGCAGCTGTT CGCGCCGGGC GGCATGATGG ACGACTTCTT CCAGAAGAAC CTGGCCTCGC AGGTCGACAC CTCCGTCAAC CCCTGGGCCT TCAAGAAGGG CGTGGACGGC AGCTCGCCGG GGCGCTCGGC GTACCTCGAT TCGTTCCAGA AGGCGCAGGC GATCCGCGAC GTGTTCTTCT CGGGCATGGC GGGCGGGCGC ACGCCCTCGT TCACCATCGA CATCCGGCCC GAGGACATGG ACGCCGCCAT CAGCCAGTTC ACGCTCGACA TCGACGGCCA GACGGTGCGC TATGCGCACG GACCGCAGGC GCCCAGCACC GTCAAGTGGC CCGGCCCGCG CAACAGCAAC CAGGTGCGGC TGCAGGTGAC GACCGCCAGC GGCACGCCGG CCGGCGGCAT CGTCACCGAA GGGCCGTGGG CGCTGCACCG GCTGTTCGAC AAGGCCTCCA TTTCGTCGGG CAGCGCGCCC GAATCGTTCA ACGCGACCTT CGACCTGCAA GGCAAGAAGG TGGTGCTCGC GGTGACGGCG AACAGCGTCT ACAACCCGCT GCGCCTGCAC CAGATGAACG GCTTTTCGTG CCCCGGGAAA TCCTGA
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Protein sequence | MLRAIFRFLV SRDLWVFLGL LAVAFLIWII GPVIAVGRYR PFESEFVRIV VIALMFAIWI ARVLYRKWRE RRLNAQLLNQ LRTPSPKEKA AKPEDAPEIK ELQSGFTDAT SILKNMRFGA DAGGKPAGRF ALFDRQYLYQ LPWYIFIGAP GSGKTTALVN SDLDFPLADQ LGKAAVRGIG GTRNCDWWFT NEAVLIDTAG RYTTHESNRE TDEGEWKGFL DLLKKFRPRQ PINGAILTIS IADLPLADDA QRARHAMALR KRLLELRNGL GINFPVYVLV TKTDLLAGFN EYFGALGRAE RSQVWGFTFP IDANPADPAK ADLRERFHQE YKLLHQRLDE RLPELLAAEP DQLRRAQAYL LPQQFASFED ILGTFLADVF NPSKFEVAPM LRGVYFTSGT QEGTAFDRVM GAIKRYLQVN APPAPPPGPG KSYFLKELLQ QVIFRDAGVA GTNLRWYRRK RAIDLAGYGL IGVLLVVVLG ACVNSWRNNR DYVAEVDTNA KAFNKAAARG ELPTVVDSNS DIASSLPVLD RLRDLPKSSH FDIGDPPMGY RFGLYQGEKL QAATDGVYQR ALEGVLLPQA AQRVEQALRE ASKTDAEYSY EALKAYLMLY DAERYDADFL QAWLLTDVDR KIGAGLTREQ RTNLESHLKA LFAERVVTSP FAKDDRLVTE TRNRLAGVPL AQRAYARLRR ILLQTSPPNA FSIAEAAGAE SALVIKRTSG KPLTDGIPTL FTYRGYWDIF DKRMAETTLA LEQEDRWVLQ IRAPGMADIT SRELLLREVR RLYLTDYIRV WDDYLLDVRL ADSRSLLQSI QMTRVLSTSE SPMSRLIRGA ARETDLLRNH DEATRSLLDQ AQNRVASTRE RIEQLIGQPD GSQRRNTVPD RPESLVDNHF APLRRMVTAP KAGGQAPIDA TAALINELYT FLTATDTALR SGNIPPSSDA VTKVQAEAGR LPVPFQGMLN DLSATASSKA AAVTRQNIGQ NAAATIGQFC SQAIAGRYPF SRGSNRDVAA GDFAQLFAPG GMMDDFFQKN LASQVDTSVN PWAFKKGVDG SSPGRSAYLD SFQKAQAIRD VFFSGMAGGR TPSFTIDIRP EDMDAAISQF TLDIDGQTVR YAHGPQAPST VKWPGPRNSN QVRLQVTTAS GTPAGGIVTE GPWALHRLFD KASISSGSAP ESFNATFDLQ GKKVVLAVTA NSVYNPLRLH QMNGFSCPGK S
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