| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0211 |
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| Symbol | |
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| ID | 7971420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 222227 |
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| End bp | 223603 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644790814 |
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| Product | type VI secretion protein, VC_A0114 family |
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| Protein accession | YP_002942140 |
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| Protein GI | 239813230 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACAGTTC GCAATCCGGG TGCCGGCAAG CAGGGCGCCC TTCCGCAGGC GTTGGCGAAT
CGCGTGGTGT GGTCCGAAGG CATGTACCTG CGGCCGCAGC ACTTCCAGCA ACTGGAGCGC
TATGTCGAGC AGTACGTCAC GCGCCGCACC GCAGGCCTGC AAGGTGCCTA TTGGGGATGG
CTCAGCCTGG ACATCGATCG CGATGCCCAC GCGCTCGGCC GCGTGTCGCT GCTCGGCGGC
GCCGGTGTGC TGCCCGACGG CACGCCCTTC TCGTTCGGCG CCGAAGATGC ACCGCTGCCC
TACGAGGTGC CGAGCGACCT GACCGATGAA CTCATCGTGC TCGCGCTGCC GCTGCGCCGC
ACCGGCAGCG AAGAGGTCAT CTTTGCCGAC GACGAGGGCT CGGCCGCGCG CTTCGGCGTG
ATCGAGCGCG AGGTGGCCGA CGGCAATTCG GTGGCGCTCG GCCCGGCGGT GCTGCAGCTT
GCGAAGCCGC GCCTGCGGCT TGCGCGCGCG TCGTCGCTCA CCGCGGAGTG GCAGGCCATC
GGCGCGGTGC GCGTGATCGA ACGGCGCACC GACCACAAGC TGGTGATCGA CGCCAACTAC
ATTCCGCCGG TGCTCGATGC ATCGGCGCAC CCCATGCTGC GCAGCATGGT TGCCGAACTG
CACGGCCTGC TCACCCAGCG CTCCGAGGCG CTGGCCTCGC GGCTCTCGCA GCCGGGCCGC
GGCGGCGTGA GCGAGGTCTC CGACTTTCTT TTGCTCGAAC TCGTCAACCG CTATCTCGCC
ACGACCTGGC ATGCGCAGCA TGCGGTGCAG GTGCACCCCG AGGAACTGTT CATCGACTGG
TTCAAGCTGG CCTGCCATCT CGCCACGCAC ACCTCGCCCA CGCGGCGCCC CGTGGTGTGG
CCCAAGTACG ACCACGACAA TCTCAACGAG ACCATCCGGC CGCTGATGGA AGAGCTGCGG
CGCTCGCTCT CGGCGGTGCT CGAACAGAGC GCCATCGCCA TCGAGCTGGA GGAGCGCAGC
CACGGCGTGC GCGTGGGCCG CATGCCCGAT CCGGTGCTGG TGCGCAACGC GGGTTTCGTG
CTCGCGGTGC ATGCCAACCT GCCCGCCGAT GCGATCCAGC AGCGCTTTCC GACGCAGGTC
AAGATCGGTT CGGTCGAGCG CATCCGCGAC CTCGTGCAGC TGCAGCTGCC GGGCGTCACG
GTGCGGCCGC TGCCGGTGGC GCCGCGCCAG ATTCCATACA ACGCGGGCTA CCACTATTTC
GAACTCGACA AGAGCGGCGA CATGTGGCGC CAGCTCGAAA AATCGGGCGG CGTTGCAATG
CACCTGGCCG GCGACTTTCC GGGCCTGGCC ATGGAGTTCT GGGCAATTCG TCCGTGA
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| Protein sequence | MTVRNPGAGK QGALPQALAN RVVWSEGMYL RPQHFQQLER YVEQYVTRRT AGLQGAYWGW
LSLDIDRDAH ALGRVSLLGG AGVLPDGTPF SFGAEDAPLP YEVPSDLTDE LIVLALPLRR
TGSEEVIFAD DEGSAARFGV IEREVADGNS VALGPAVLQL AKPRLRLARA SSLTAEWQAI
GAVRVIERRT DHKLVIDANY IPPVLDASAH PMLRSMVAEL HGLLTQRSEA LASRLSQPGR
GGVSEVSDFL LLELVNRYLA TTWHAQHAVQ VHPEELFIDW FKLACHLATH TSPTRRPVVW
PKYDHDNLNE TIRPLMEELR RSLSAVLEQS AIAIELEERS HGVRVGRMPD PVLVRNAGFV
LAVHANLPAD AIQQRFPTQV KIGSVERIRD LVQLQLPGVT VRPLPVAPRQ IPYNAGYHYF
ELDKSGDMWR QLEKSGGVAM HLAGDFPGLA MEFWAIRP
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