Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0188 |
Symbol | |
ID | 7971397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 192461 |
End bp | 193621 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644790791 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002942117 |
Protein GI | 239813207 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACGATTC CGATTTCAAG GCGCGCCCTG GTGGCGGGCG GCGCAGCCCT GGCACTGGGC CCGGGCCTTC TTCGTTCGGC GCGCGCCGAC AACGGCGTGA CCGACGGCCT CATCCGCATC GGCCAGTCGG CCGTGTTCAG CGGCCCGGCC AAGGACTTCG GCATCGACTA CCGCGCGGGC ATCAAGCTGT ACTTCGAGCG CGCCAACAAG TCGGGCGGCA TCAACGGCCG CAAGCTCGAG CTCGTCAGCT ACGACGATGC CTACGATCCC GCCAGGACGG CCGCCAACAC CGCGAAGCTG ATCGACGAGG ACAAGGTCTT CGCGCTCGCG GGCTTCGTCG CCACCGGCAA CCTCGCGGCC GCGATGCCGC TGGCCGAGAA GGCCGGCGTT CCGATGTTCG CGCCGCTGGT GGGCACCACC TCGTTCCGCA CCAAGGTCAA CCGCCTGCTG TTCCACGTGC GCGCGGGCTA CGACCTCGAG CTGCGCAAGA TCATCAGCCA TCTCTCGACC CTCAGCCTCG CGTCGATTGC GGTGGTCTAC CAGGACAGCG CCTTCGGCAA GTCGAACCTC GCCACCTGCG AGCAGCTGGC CGCCGACTAC AAGGTGCAGG TCGTGAAGAC GCTGCCGCTC GCGATTGCCG CCGAAGACGC GAAGCAGGTG GTCGCCAGCC TGGCCGAGGC CAAGCCCGGC GCGGTCCTGA TGATCATGGC TGGGCGCATG GTCGAAGTGT TCATGCGCGA CTACCGTGCG AACGGCGGGG CGGCGCCGCT CTATACGCTG TCGGTCGGCA TCACCGACGC GGCCGGTTCC GCCAAGCGGC TCGAAGGCAA GCTCGCGGGC CTGGTCACGG CCAGCATCGT GCCGCCGCCG CAGGCCGTGC GCGTGCCCAT CGTGGCCGAC TACCAGCGCG ACCGCGCCGA GTTCGGCGAG AAGATCGACA GCTACACCAC GCTCGAAGGC TACATCGCCT CGCGCGTGAT GGTCGAAGGC CTGCGCCGCG CGGGCAAGGC GCTCACGCGC GACAGCTTCA TTGCCGGGCT CGAAGGCATC GGCAATGCGC GCTTCGGCGA TTTCCCGGTC GAGTACAGCG CGAAGAACCA CAACGGCTCG ACCTTCGTGG ACCTGGAGAT GTACACCCGT GACGGCCAGT TGCGGCGCTG A
|
Protein sequence | MTIPISRRAL VAGGAALALG PGLLRSARAD NGVTDGLIRI GQSAVFSGPA KDFGIDYRAG IKLYFERANK SGGINGRKLE LVSYDDAYDP ARTAANTAKL IDEDKVFALA GFVATGNLAA AMPLAEKAGV PMFAPLVGTT SFRTKVNRLL FHVRAGYDLE LRKIISHLST LSLASIAVVY QDSAFGKSNL ATCEQLAADY KVQVVKTLPL AIAAEDAKQV VASLAEAKPG AVLMIMAGRM VEVFMRDYRA NGGAAPLYTL SVGITDAAGS AKRLEGKLAG LVTASIVPPP QAVRVPIVAD YQRDRAEFGE KIDSYTTLEG YIASRVMVEG LRRAGKALTR DSFIAGLEGI GNARFGDFPV EYSAKNHNGS TFVDLEMYTR DGQLRR
|
| |