| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0185 |
|---|
| Symbol | |
|---|
| ID | 7971394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 190082 |
|---|
| End bp | 190888 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644790788 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002942114 |
|---|
| Protein GI | 239813204 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTCC TCAAAGTAGA CAACCTAGGC AAATCCTTCG GCGGCGTCAA AGCCGTCGAC
GGCATCAGCT TCGAGCTCGA GGCCGGCGAG TTGCTGGCCC TCATCGGCCC GAACGGCGCC
GGCAAGTCCA CCACCTTCAA CATGGTCAAC GGCCAGCTCA AGGCCGACCA GGGTTCGATC
GTGTTCGACG GCCATGAGCT CGTGGGCCAG AAGCCGCGCG AGATCTGGCG CAAGGGCGTG
GGCCGCACCT TCCAGATCGC CGAGACCTTT GCCTCGCTCA CCGTCGCCGA GAACGTGCAG
ATGGCGATGC TCTCGCACGA CGGCAAGCTG TTCTCGATGT GGCGCCGCGC GGCGGACCAC
AAGCGCGACG AAGCGCTGGC GCTGCTCGAC CAGGTCGGCA TGAAGGCGCA GGCCGACCGG
CCCTGCAGCG AGCTCGCCTA TGGCGACGTC AAGCGCGTCG AGCTCGCGAT CGCGATGGCC
AACGCGCCCA AGCTGCTGCT GATGGACGAG CCCACCGCCG GCATGGCGCC GAAGGAGCGC
AACTCGCTGA TGGCGCTGAC CAAGGAGCTC GTGGTCCAGC GCGGCCTGGC CGTGCTGTTC
ACCGAGCACA GCATGGACGT GGTGTTCGCC TACGCCGACC GCATGATCGT GCTGGCCCGC
GGCCGCCTGA TCGCGCAGGG CAAGCCGCTC GAGATCCGCG ACCATCCGAA GGTGCAGGAG
GTGTACTTCG GCAGCGGCAA GACCTTCGAG AAGATCGCAG AAAAAGCCGC CGAAGTGAAC
GCGGCCGTGG GAGCAGCAAC CGCATGA
|
|---|
| Protein sequence | MTLLKVDNLG KSFGGVKAVD GISFELEAGE LLALIGPNGA GKSTTFNMVN GQLKADQGSI
VFDGHELVGQ KPREIWRKGV GRTFQIAETF ASLTVAENVQ MAMLSHDGKL FSMWRRAADH
KRDEALALLD QVGMKAQADR PCSELAYGDV KRVELAIAMA NAPKLLLMDE PTAGMAPKER
NSLMALTKEL VVQRGLAVLF TEHSMDVVFA YADRMIVLAR GRLIAQGKPL EIRDHPKVQE
VYFGSGKTFE KIAEKAAEVN AAVGAATA
|
|---|
| |