| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0130 |
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| Symbol | |
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| ID | 7971666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 129585 |
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| End bp | 130487 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790733 |
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| Product | intradiol ring-cleavage dioxygenase |
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| Protein accession | YP_002942059 |
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| Protein GI | 239813149 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACGA TTGCACAAAC ATCCGACGAG ACTCCCATGA ACATCGCCAC CTCCCCCGAC
TCGGTGCTGG GCTTCGCGCT CCAAGCCATG GAGCGCACAC CCGATGCGCG CCTTCGCACC
GTGATGAACG CACTCACGCG CCACCTGCAT GCCTTCGTCC GGGAGGTGAA GCTGAGCGAG
GAGGAGTTCG AGCAGGCGCT CGAATTCATC GTCGCCATCG GCCAGGCCAC GGGCGAGAAG
AAGAACGAGG TGGTGCTGGC GGCCGACATC CTCGGCATCT CCACCGTGGT GGCGCTGCAG
AACAACCAGG ACCCGCACGG CGAATCGCCG GCCGCGCTGC TCGGCCCGTT CTGGCGCGCG
AATTCGCCGG CCTGCGCGCT GGGCGACAGC ATCGCGCGCT CGGGCACGCC GGGCCTGCCG
CTCGCGGTGG CGGGCACGGT GCGCAATGCG CGGGGCGAGC CGATCGCCGG CGCCACGGTC
GACGTGTGGC AGGCCTCGCC GATCGGCCTC TACGAAAACC AGGACCCGGC GCAGGAAGAC
ATGAACCTGC GCGGCCGCTT CACGACCGAT GCGCAAGGGC GCTTCCACTT CCGCAGCGTG
CGGCCGGCCG GCTATCCGGT GCCGACCGAC GGGCCCTGCG GCGTGCTGCT GCGCGCGCAG
CAGCGCCACC CCAACCGGCC CGCGCACCTG CACTTCATGG TGAGCAAGCC GGGCCACAAG
GTGCTGGTCA CGCAGGTGTT CGCCGATGAC GACCAGAACC TCAAGAGCGA CCCGACCTTC
GGCGTGACGC AGCGGCTGAT CGGCTGCTTC GCGCTGGCGC CCGACGGCCA GAGCGCCACG
CTGCAGTATG ACTTCCAGCT CGAACCGGGC GAGATGAAGT TTCCGCGTCC ACCCATCCCC
TGA
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| Protein sequence | MQTIAQTSDE TPMNIATSPD SVLGFALQAM ERTPDARLRT VMNALTRHLH AFVREVKLSE
EEFEQALEFI VAIGQATGEK KNEVVLAADI LGISTVVALQ NNQDPHGESP AALLGPFWRA
NSPACALGDS IARSGTPGLP LAVAGTVRNA RGEPIAGATV DVWQASPIGL YENQDPAQED
MNLRGRFTTD AQGRFHFRSV RPAGYPVPTD GPCGVLLRAQ QRHPNRPAHL HFMVSKPGHK
VLVTQVFADD DQNLKSDPTF GVTQRLIGCF ALAPDGQSAT LQYDFQLEPG EMKFPRPPIP
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