Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0107 |
Symbol | |
ID | 7971643 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 105660 |
End bp | 107675 |
Gene Length | 2016 bp |
Protein Length | 671 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644790710 |
Product | acetoacetyl-CoA synthetase |
Protein accession | YP_002942036 |
Protein GI | 239813126 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
TIGRFAM ID | [TIGR01217] acetoacetyl-CoA synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.924378 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCGCTC CCAACATTCC CCAGATCCGC CTCTACCAGG ACTGGCTGCG CGAGCAGCGC GGCCTGTCCT TCGACACCTA TGACGCGCTG TGGCGCTGGT CCGTGACCGA TCTCGACGCC TTCTGGCAGA GCATCTGGGA CTACATGGGC ATCGTGTCGC CCACGCCGCA CACGGCGGTG CTGGCCGACG ACCGCATGCC CGGCGCCACG TGGTTTCCGG GCGCCGAGGT CAACTACGCG CGCGAGGTGC TGCGCCATGC CGATGCGGCG CATGCGGCCG GCCTGCCGGC CATCGTGAGC GACAACGAGC TGGGCGAAGT GCGCGAGATG CCCTGGCCCG AGCTGCGCCG GCAGGTGGCC TCGGTGGCGC TCACGCTCAA GTCGCTGGGT GTGCAGCGCG GCGACCGCGT GGCCGCCTAC CTGCCCAATG TGCCCGAGAC CATGGTGGCC TTTCTCGCGT GTTCGAGCAT CGGCGCGGTG TGGAGCGTGT GCGCGCCCGA CATGGGCACG GCCGCCGTGG TCGACCGTTT CCGCCAGATC GAGCCCAAGC TGCTGATCGC CGCCGACGGC GTGCACTACG GTGCCAAGCC CATCGACCGC AGCGCGGTGG TGCAGGAGCT GCGCGATGCG CTGCCCAGCG TGCAGAAGCT GCTGTTGCTG CGGACGCCCC ATGCCGCGCA GCAGCTCGCC GCCGACGCCG ACTGGCAGGC CGCCAGCGCG CGCCGCGACG CCGAGGTGGC GGCCTTCGAG CCCGAATGGC TGCCCTTCGA CCACCCGATC TGGATCGTCT ATTCGAGCGG CACCACCGGC CTGCCCAAGC CCATCGTGCA CGGGCAGGGC GGCATCATCA TGACGATGTA CGCCTGCGGC CTGCACAACG ACATCGGCGC GAGCTACGGC GCCAACAACT TCGACGAGCG CTTCCACTGG TACAGCTCGA CCGGCTGGGT CATGTGGAAC TGCCAGCTCG CGGGCCTGGC CTTCGGCGCG ACCATCGTCA TCTACGACGG CCATCCGGCC GGCAGCAAGG AGAAGCCCGA CTGGGCCGTG CTGTGGCGCT TCGTCGCGAA GCACCGCATC ACTTTCTTCG GTGCCGGCGC GGCCTACTTC ACCAACTGCA TGAAGGCCGG CGTGGTCGCG GCCGAGTGCG GCGACCTGTC GCGCGTGCGC GCGCTCGGCA GCACCGGCTC GCCGCTGTCG GAAGAGGTGC AGCGCTGGGG CACGGCGCAG CTGCTGGCCG CGGGCGCGAG CAGCGTGTGG TGGTGCAACA TTTCCGGCGG CACGGATTTT TGCGGCGCCT TCGTCGGCGG CAACCGCGAG CTGCCCGAAG TGCCCGGGCA GATGCAGTGC CGCCAGATCG GCCATGCGGT GGAAGCCTGG AACGAAGACG GCAAGCCCGT CATCGGCGAG GTGGGCGAGC TGGTCTGCAC GCGGCCCATC CCATCGATGC CGCTGTACTT CTGGGGCGAC GAAGGCAACG CGCGCTACCT GTCGAGCTAC TTCGACACCT ACCCCGGCGT CTGGCGCCAC GGCGACTGGA TCAGGATCGG CGAGGACGGC GGCTGCATCA TCTACGGCCG CAGCGACGCC ACCATCAACC GCCTGGGCCT GCGCATGGGC ACCAGCGAGA TCTACAGCGC CGTCGAGGCG CTGCCCGAAG TGCTCGACTC CATGGTGGTC GACCTCGAAT ACCTGGGCCG CGAAAGCTAC ATGCCGCTGT TCGTGGTGCT GCGCCCCGGC GTGGCGCTCG ACGATGCGAT GCGCGGCAAG ATCAACCACG CGATCAAGAC CTCGCTCTCG CCGCGCTTCC TGCCCAACGA CATCTTCCAG GTGGCCGAGA TCCCGCGCAC GCTCTCGGGC AAGAAGCAGG AGCTGCCGAT CAAGAAGCTG CTGCTGGGCC AGCCGCTTCA GAAGGTGGTC AACCCCGAGG CCATGGCCAA CCCCGGCTCG CTCGGCTGGT ACGTGGAGTT TGCGGCGCGG CGCGCCGCGG CCTCTCAGGG CATCAGCAGT TCGTAG
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Protein sequence | MPAPNIPQIR LYQDWLREQR GLSFDTYDAL WRWSVTDLDA FWQSIWDYMG IVSPTPHTAV LADDRMPGAT WFPGAEVNYA REVLRHADAA HAAGLPAIVS DNELGEVREM PWPELRRQVA SVALTLKSLG VQRGDRVAAY LPNVPETMVA FLACSSIGAV WSVCAPDMGT AAVVDRFRQI EPKLLIAADG VHYGAKPIDR SAVVQELRDA LPSVQKLLLL RTPHAAQQLA ADADWQAASA RRDAEVAAFE PEWLPFDHPI WIVYSSGTTG LPKPIVHGQG GIIMTMYACG LHNDIGASYG ANNFDERFHW YSSTGWVMWN CQLAGLAFGA TIVIYDGHPA GSKEKPDWAV LWRFVAKHRI TFFGAGAAYF TNCMKAGVVA AECGDLSRVR ALGSTGSPLS EEVQRWGTAQ LLAAGASSVW WCNISGGTDF CGAFVGGNRE LPEVPGQMQC RQIGHAVEAW NEDGKPVIGE VGELVCTRPI PSMPLYFWGD EGNARYLSSY FDTYPGVWRH GDWIRIGEDG GCIIYGRSDA TINRLGLRMG TSEIYSAVEA LPEVLDSMVV DLEYLGRESY MPLFVVLRPG VALDDAMRGK INHAIKTSLS PRFLPNDIFQ VAEIPRTLSG KKQELPIKKL LLGQPLQKVV NPEAMANPGS LGWYVEFAAR RAAASQGISS S
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