Gene Vapar_0105 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0105 
Symbol 
ID7971641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp103891 
End bp104835 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content67% 
IMG OID644790708 
ProductNMT1/THI5 like domain protein 
Protein accessionYP_002942034 
Protein GI239813124 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.318497 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAAC GACGCACCCT GCTGTCGGCG CTGGCCGCCG CCTCGGCCGC CGCGGCGCTG 
CCCTCGCGCG CGCAATCGAA CCCGAAGATC GTGTTCGGCT ACACGGCCGT GTCCGACTTC
GCCTCGGTCT TCGTGGCCGC GGAAGAGGGC TACTTCAAGA AGCGCAATCT CGACGTCGAG
CTCAAGTTCA TTCCGCTCAA CTCCACCATT CCCGCGGCGC TGCAGTCCGA CTCGCTGCAG
ATCGGCGGGC CCACGCCCTC GGTGTTCCTG CAGGCGGTGG ACGGCGGGCT CGACCTGGTG
CTGGTGGCCG GCGGCGGGCT CACCTCGAAG ACCATCACCG GCTTCGGCCT GGTGGCGCGC
GCCGGCTCGG GCATCAAGGG GCCGCAGGAC TGCGTGGGCA AGAAGATCGG CGTGCCGGGG
CTCGGCGCGT TCCTGCACGT GACCTTCCGT GCCTGGCTCA AGGAGAGCGG CGTGGACTAC
CGCAAGGTCA ACTTCGTCGA GGCCTCGTTC CCGCAGCATG CCGACCTGCT GCGCGGCGGC
TCGGTCGACG CGGTGGTGTC GGCCGATCCG TTCATGAGCC GCATCACCGA AAGCGGCGCG
GGCTACGTGG CCTCGTACTA CTCCACCTTC CTGCCCGAGA ACAACCAGAC CATCGTGCAT
GCGGCCAAGC GCGAATGGGT GTTGAAGAAC CCGGGCGCCG CGCGCGCGTT CCGCGAGTCG
CTGGTCGAGG CCGCGGCCTT CATGCAGCAG CCCAAGAACG ACGCCAAGGT GCGCGCAGCC
ATCGGCAAGT ACATCAAGCT GCCGCCCGAG GTGCTCGCGA AGATCCAGAT CTCGCCGCCC
GGCGCCACGG TGAGCGAGAA GCAGTTGGGC TACTGGGTCG GCCTGATGAA GGACCAGGAC
ATGCTCAAGA CCTCCATCGA CGTTGCGAAG CTGATCGCCA AGTGA
 
Protein sequence
MMKRRTLLSA LAAASAAAAL PSRAQSNPKI VFGYTAVSDF ASVFVAAEEG YFKKRNLDVE 
LKFIPLNSTI PAALQSDSLQ IGGPTPSVFL QAVDGGLDLV LVAGGGLTSK TITGFGLVAR
AGSGIKGPQD CVGKKIGVPG LGAFLHVTFR AWLKESGVDY RKVNFVEASF PQHADLLRGG
SVDAVVSADP FMSRITESGA GYVASYYSTF LPENNQTIVH AAKREWVLKN PGAARAFRES
LVEAAAFMQQ PKNDAKVRAA IGKYIKLPPE VLAKIQISPP GATVSEKQLG YWVGLMKDQD
MLKTSIDVAK LIAK