Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0105 |
Symbol | |
ID | 7971641 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 103891 |
End bp | 104835 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644790708 |
Product | NMT1/THI5 like domain protein |
Protein accession | YP_002942034 |
Protein GI | 239813124 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.318497 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAAC GACGCACCCT GCTGTCGGCG CTGGCCGCCG CCTCGGCCGC CGCGGCGCTG CCCTCGCGCG CGCAATCGAA CCCGAAGATC GTGTTCGGCT ACACGGCCGT GTCCGACTTC GCCTCGGTCT TCGTGGCCGC GGAAGAGGGC TACTTCAAGA AGCGCAATCT CGACGTCGAG CTCAAGTTCA TTCCGCTCAA CTCCACCATT CCCGCGGCGC TGCAGTCCGA CTCGCTGCAG ATCGGCGGGC CCACGCCCTC GGTGTTCCTG CAGGCGGTGG ACGGCGGGCT CGACCTGGTG CTGGTGGCCG GCGGCGGGCT CACCTCGAAG ACCATCACCG GCTTCGGCCT GGTGGCGCGC GCCGGCTCGG GCATCAAGGG GCCGCAGGAC TGCGTGGGCA AGAAGATCGG CGTGCCGGGG CTCGGCGCGT TCCTGCACGT GACCTTCCGT GCCTGGCTCA AGGAGAGCGG CGTGGACTAC CGCAAGGTCA ACTTCGTCGA GGCCTCGTTC CCGCAGCATG CCGACCTGCT GCGCGGCGGC TCGGTCGACG CGGTGGTGTC GGCCGATCCG TTCATGAGCC GCATCACCGA AAGCGGCGCG GGCTACGTGG CCTCGTACTA CTCCACCTTC CTGCCCGAGA ACAACCAGAC CATCGTGCAT GCGGCCAAGC GCGAATGGGT GTTGAAGAAC CCGGGCGCCG CGCGCGCGTT CCGCGAGTCG CTGGTCGAGG CCGCGGCCTT CATGCAGCAG CCCAAGAACG ACGCCAAGGT GCGCGCAGCC ATCGGCAAGT ACATCAAGCT GCCGCCCGAG GTGCTCGCGA AGATCCAGAT CTCGCCGCCC GGCGCCACGG TGAGCGAGAA GCAGTTGGGC TACTGGGTCG GCCTGATGAA GGACCAGGAC ATGCTCAAGA CCTCCATCGA CGTTGCGAAG CTGATCGCCA AGTGA
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Protein sequence | MMKRRTLLSA LAAASAAAAL PSRAQSNPKI VFGYTAVSDF ASVFVAAEEG YFKKRNLDVE LKFIPLNSTI PAALQSDSLQ IGGPTPSVFL QAVDGGLDLV LVAGGGLTSK TITGFGLVAR AGSGIKGPQD CVGKKIGVPG LGAFLHVTFR AWLKESGVDY RKVNFVEASF PQHADLLRGG SVDAVVSADP FMSRITESGA GYVASYYSTF LPENNQTIVH AAKREWVLKN PGAARAFRES LVEAAAFMQQ PKNDAKVRAA IGKYIKLPPE VLAKIQISPP GATVSEKQLG YWVGLMKDQD MLKTSIDVAK LIAK
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