| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0079 |
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| Symbol | |
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| ID | 7974037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 76671 |
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| End bp | 77411 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644790681 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002942008 |
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| Protein GI | 239813098 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.596846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGACA ACACATCCCC CACCGTGGTC ATCACCGGTG CCTCGAGCGG CATCGGCCTG
GGCCTTGCGC AGGCGTACCT CGAGCGCGGC TTCAACGTGG TCGCGAATGC CCGCACCGAA
GAGCGGCTCG CAGCCGCCGC GAAGCAGCTC GGCAACCCGG CGCGCCTTCT CGGCGTCGCG
GGCGACATCG GCCGCCGCGA CACTGCGCAG CAACTGGTCG AGCGCGCCGT GGAACGCTTC
GGCCAGGTCG ACGTGCTCAT CAACAACGCG GGCATCTTCA ACGCGAAGCC CTTCGTCGAA
TACACCGAAG ACGACCTCGA GCAAATGGTG GCCACGAACC TCAAGGGCTT CGTCTATGCC
TCGCAGGCCG CAGCGAAGCA CATGGTGGCG CGCCGGCAGG GCCACATCGT GAACATCACC
GCCAGCATCG CGCTGCAGCC GAACCAGCAG GTGCCGGCTG CGTTGCCGGT GCTGATCAAG
GGCGGCATCA ATGCCGCGAC GCGCGCGCTG GCGCTCGAAC TCGCACCGCA CAACGTCAAG
GTGAATGCGG TGGCACCCGG CATCGTGGAC ACGCCGCTGT ACACGCCCGA GCAGCACGGC
TTCCTCAACG GCCTGGCGCC CGCCGGCCGC ATCGCGACCG TGCGCGAGAT CGCTGATGCG
GTGCTCTACC TCACGAGCGC GGATTTCACG ACCGGCGTGG TGCTGCCCGT GGACGGCGGC
ATGAGCTCCG GCAAGTGGTA A
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| Protein sequence | MQDNTSPTVV ITGASSGIGL GLAQAYLERG FNVVANARTE ERLAAAAKQL GNPARLLGVA
GDIGRRDTAQ QLVERAVERF GQVDVLINNA GIFNAKPFVE YTEDDLEQMV ATNLKGFVYA
SQAAAKHMVA RRQGHIVNIT ASIALQPNQQ VPAALPVLIK GGINAATRAL ALELAPHNVK
VNAVAPGIVD TPLYTPEQHG FLNGLAPAGR IATVREIADA VLYLTSADFT TGVVLPVDGG
MSSGKW
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