Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0077 |
Symbol | |
ID | 7974035 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 74348 |
End bp | 76294 |
Gene Length | 1947 bp |
Protein Length | 648 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644790679 |
Product | GAF modulated sigma54 specific transcriptional regulator, Fis family |
Protein accession | YP_002942006 |
Protein GI | 239813096 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTTCCC TGCAATCGCG TCACATCGAC AACGTCTACT CCATCGCCAC CGGCACGGCG CTGGCCGATC CGGCGGCGAG CCTGGTCCAC AAGTCGTGGG CGCGCTGCGT GCGCGAGCAT GGGCTCGATC CGACGAAGCC GAGCCCCGCG CGCATCCTGC CGGCGCAGGA GGTGCGCGCG CACCAGCAGC AGCTGGAGCA TTTTTTGCGC GCGGCGCGCG CCGGCATGGA AGACATCTAC CGCCGCGTGG CGGACCTCGG CTACATGGTG CTGCTGACCG ACGCCGAAGG CATCACGGTC GACTACATCG GCAACCCGGC CTGGGACGAC CAGCTGCGCC GCGCCGGCCT CTACCTGGGC GCCGACTGGA ACGAAGCCCA TGCGGGCACC TGCGGCGTGG GCACCTGCCT GATCGAGCGC CAGCCGATGA CCTGCCACCA GACCGAGCAC TTCGATGCCA CGCACATCGC GCTGACCTGC ACGACGGCGC CGCTGTTCGA CCACAGCGGC AGGCTCACGG CCATCCTCGA CGTCTCGGCG CTGCGCTCGC CCGAGGCCCG GGAGAGCCAG CACCTGGTGC GGCACCTGGT GTCGATCTAC GCGCGGATGA TCGAGGACGC CGATTTCCTG CGCAGCTTCC GCGGCCACTG GATCCTGCGG CTGGGCACGG CCTACGGGCT GGTCGACGTG GCCGGCGAGC TGATGCTGGC CTTCGACGAG GGCGGCACGG TGGTCGGCGC CAACAGCGGC GCGCGGCAGG CCCTGGCCGA AAACCCGCTG GGCCGCGAGG TGTCGCAGCT GCTGCACATA CCGATGGATG CGATCTGGCG CCTGGGCAAC GGCGGCGCAT CGGCCATGCC TTTCGCGCAC ACGGTGCTGC TGCCGGGCGG CGGCGAATAC CACGCCTCGC TGCTGGCGCC GCGCGTGCGG CGGGCGGCGG CGCCCGCGCC GGACATTGCC CGTCCCTCCG ACCGCCTGCC GCCGCTCGCG CGCATCGCCG GCGACGATCC GGCCATGCAG CAGCTTCTCG CGCAGGCGCA GCGTCTGGTG GACCGCGGCA TCCATGTGCT GGTCGAAGGC GAGACCGGCA GCGGCAAGGA AGTGCTGGCG CGCGCCATGC ACGGCGCGAG CCGCCGCGCG GCCATGCCCT TCGTGGCGGT GAACTGCGCG GCCATTCCCG ATTCGCTGAT CGAGAGCGAG CTCTTCGGCT ACACGCCCGG CAGCTTCACC GGCGGCCGTG CCAAGGGCAT GAAGGGGCTG ATCGCGCAGG CCGACCGCGG CACGCTGTTC CTCGACGAGA TCGGCGACAT GCCGATGGCG CTGCAGACGC GGCTCTTGCG CGTGCTGTCC GAAGGCGAGG TGCTGCCGCT GGGGGCGGAG TCGCCGCAGC GCGTGGACCT TGCCGTGGTG GCGGCCACGC ACCGCAACCT GTCGGCGCTG GTCGCGGCCG GGCGCTTCCG CGAAGACCTG TACTACCGCC TGTGCGGCGC GGTGCTCAAG CTGCCGCCGC TGCGCGCGCG GGGTGACCGG CGCTACCTGA TCGAGGCGAT GTTCAATGAA GAGGCGGCGG CGATGCGCCC TGGTGCGCGG CTGTCCGACG CGGCATTGCA GCGGCTGCTG GCCCATGCGT GGCCCGGCAA CCTGCGCGAG CTGCGCAACG TGCTGCGGCT GGCGCTTGCG CTGTGTGCGG ATGGCACAGT GGGCGCGCAG GACCTCCAGC TGCCCGCGCC TTCCGATTCT GCCGCGGCGG CCGCCGTGCC TTCAGCTCCC GCGAGCGCCG AAGCCGGTGC TGGCGACGGC GGCCTCGAGG GCGCGGACGA GCTGCGCGCC CTGCTCCAGC GCCATCGCTG GCACGTGGCG CGCGCGGCCG CCGAGCTCGG CGTGTGCCGC GCCACCGTGT ACCGGCACAT GAAGCGGCAC GGCATCGCGC CGCCGCAGCG GATGTAA
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Protein sequence | MTSLQSRHID NVYSIATGTA LADPAASLVH KSWARCVREH GLDPTKPSPA RILPAQEVRA HQQQLEHFLR AARAGMEDIY RRVADLGYMV LLTDAEGITV DYIGNPAWDD QLRRAGLYLG ADWNEAHAGT CGVGTCLIER QPMTCHQTEH FDATHIALTC TTAPLFDHSG RLTAILDVSA LRSPEARESQ HLVRHLVSIY ARMIEDADFL RSFRGHWILR LGTAYGLVDV AGELMLAFDE GGTVVGANSG ARQALAENPL GREVSQLLHI PMDAIWRLGN GGASAMPFAH TVLLPGGGEY HASLLAPRVR RAAAPAPDIA RPSDRLPPLA RIAGDDPAMQ QLLAQAQRLV DRGIHVLVEG ETGSGKEVLA RAMHGASRRA AMPFVAVNCA AIPDSLIESE LFGYTPGSFT GGRAKGMKGL IAQADRGTLF LDEIGDMPMA LQTRLLRVLS EGEVLPLGAE SPQRVDLAVV AATHRNLSAL VAAGRFREDL YYRLCGAVLK LPPLRARGDR RYLIEAMFNE EAAAMRPGAR LSDAALQRLL AHAWPGNLRE LRNVLRLALA LCADGTVGAQ DLQLPAPSDS AAAAAVPSAP ASAEAGAGDG GLEGADELRA LLQRHRWHVA RAAAELGVCR ATVYRHMKRH GIAPPQRM
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