Gene Vapar_0077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0077 
Symbol 
ID7974035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp74348 
End bp76294 
Gene Length1947 bp 
Protein Length648 aa 
Translation table11 
GC content72% 
IMG OID644790679 
ProductGAF modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_002942006 
Protein GI239813096 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTTCCC TGCAATCGCG TCACATCGAC AACGTCTACT CCATCGCCAC CGGCACGGCG 
CTGGCCGATC CGGCGGCGAG CCTGGTCCAC AAGTCGTGGG CGCGCTGCGT GCGCGAGCAT
GGGCTCGATC CGACGAAGCC GAGCCCCGCG CGCATCCTGC CGGCGCAGGA GGTGCGCGCG
CACCAGCAGC AGCTGGAGCA TTTTTTGCGC GCGGCGCGCG CCGGCATGGA AGACATCTAC
CGCCGCGTGG CGGACCTCGG CTACATGGTG CTGCTGACCG ACGCCGAAGG CATCACGGTC
GACTACATCG GCAACCCGGC CTGGGACGAC CAGCTGCGCC GCGCCGGCCT CTACCTGGGC
GCCGACTGGA ACGAAGCCCA TGCGGGCACC TGCGGCGTGG GCACCTGCCT GATCGAGCGC
CAGCCGATGA CCTGCCACCA GACCGAGCAC TTCGATGCCA CGCACATCGC GCTGACCTGC
ACGACGGCGC CGCTGTTCGA CCACAGCGGC AGGCTCACGG CCATCCTCGA CGTCTCGGCG
CTGCGCTCGC CCGAGGCCCG GGAGAGCCAG CACCTGGTGC GGCACCTGGT GTCGATCTAC
GCGCGGATGA TCGAGGACGC CGATTTCCTG CGCAGCTTCC GCGGCCACTG GATCCTGCGG
CTGGGCACGG CCTACGGGCT GGTCGACGTG GCCGGCGAGC TGATGCTGGC CTTCGACGAG
GGCGGCACGG TGGTCGGCGC CAACAGCGGC GCGCGGCAGG CCCTGGCCGA AAACCCGCTG
GGCCGCGAGG TGTCGCAGCT GCTGCACATA CCGATGGATG CGATCTGGCG CCTGGGCAAC
GGCGGCGCAT CGGCCATGCC TTTCGCGCAC ACGGTGCTGC TGCCGGGCGG CGGCGAATAC
CACGCCTCGC TGCTGGCGCC GCGCGTGCGG CGGGCGGCGG CGCCCGCGCC GGACATTGCC
CGTCCCTCCG ACCGCCTGCC GCCGCTCGCG CGCATCGCCG GCGACGATCC GGCCATGCAG
CAGCTTCTCG CGCAGGCGCA GCGTCTGGTG GACCGCGGCA TCCATGTGCT GGTCGAAGGC
GAGACCGGCA GCGGCAAGGA AGTGCTGGCG CGCGCCATGC ACGGCGCGAG CCGCCGCGCG
GCCATGCCCT TCGTGGCGGT GAACTGCGCG GCCATTCCCG ATTCGCTGAT CGAGAGCGAG
CTCTTCGGCT ACACGCCCGG CAGCTTCACC GGCGGCCGTG CCAAGGGCAT GAAGGGGCTG
ATCGCGCAGG CCGACCGCGG CACGCTGTTC CTCGACGAGA TCGGCGACAT GCCGATGGCG
CTGCAGACGC GGCTCTTGCG CGTGCTGTCC GAAGGCGAGG TGCTGCCGCT GGGGGCGGAG
TCGCCGCAGC GCGTGGACCT TGCCGTGGTG GCGGCCACGC ACCGCAACCT GTCGGCGCTG
GTCGCGGCCG GGCGCTTCCG CGAAGACCTG TACTACCGCC TGTGCGGCGC GGTGCTCAAG
CTGCCGCCGC TGCGCGCGCG GGGTGACCGG CGCTACCTGA TCGAGGCGAT GTTCAATGAA
GAGGCGGCGG CGATGCGCCC TGGTGCGCGG CTGTCCGACG CGGCATTGCA GCGGCTGCTG
GCCCATGCGT GGCCCGGCAA CCTGCGCGAG CTGCGCAACG TGCTGCGGCT GGCGCTTGCG
CTGTGTGCGG ATGGCACAGT GGGCGCGCAG GACCTCCAGC TGCCCGCGCC TTCCGATTCT
GCCGCGGCGG CCGCCGTGCC TTCAGCTCCC GCGAGCGCCG AAGCCGGTGC TGGCGACGGC
GGCCTCGAGG GCGCGGACGA GCTGCGCGCC CTGCTCCAGC GCCATCGCTG GCACGTGGCG
CGCGCGGCCG CCGAGCTCGG CGTGTGCCGC GCCACCGTGT ACCGGCACAT GAAGCGGCAC
GGCATCGCGC CGCCGCAGCG GATGTAA
 
Protein sequence
MTSLQSRHID NVYSIATGTA LADPAASLVH KSWARCVREH GLDPTKPSPA RILPAQEVRA 
HQQQLEHFLR AARAGMEDIY RRVADLGYMV LLTDAEGITV DYIGNPAWDD QLRRAGLYLG
ADWNEAHAGT CGVGTCLIER QPMTCHQTEH FDATHIALTC TTAPLFDHSG RLTAILDVSA
LRSPEARESQ HLVRHLVSIY ARMIEDADFL RSFRGHWILR LGTAYGLVDV AGELMLAFDE
GGTVVGANSG ARQALAENPL GREVSQLLHI PMDAIWRLGN GGASAMPFAH TVLLPGGGEY
HASLLAPRVR RAAAPAPDIA RPSDRLPPLA RIAGDDPAMQ QLLAQAQRLV DRGIHVLVEG
ETGSGKEVLA RAMHGASRRA AMPFVAVNCA AIPDSLIESE LFGYTPGSFT GGRAKGMKGL
IAQADRGTLF LDEIGDMPMA LQTRLLRVLS EGEVLPLGAE SPQRVDLAVV AATHRNLSAL
VAAGRFREDL YYRLCGAVLK LPPLRARGDR RYLIEAMFNE EAAAMRPGAR LSDAALQRLL
AHAWPGNLRE LRNVLRLALA LCADGTVGAQ DLQLPAPSDS AAAAAVPSAP ASAEAGAGDG
GLEGADELRA LLQRHRWHVA RAAAELGVCR ATVYRHMKRH GIAPPQRM