Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0052 |
Symbol | |
ID | 7974010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 52820 |
End bp | 54244 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644790654 |
Product | FAD linked oxidase domain protein |
Protein accession | YP_002941981 |
Protein GI | 239813071 |
COG category | [C] Energy production and conversion |
COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGCCC CGACCCCAAC CTCGCACCTG CTGCCGGAGC TTCATCTGCG CAATGTGCCC GACAGCCTGA TCGAGGGCCT GAAAGCGCGC TTCGGCAGCA ACTGTTCCAC GGCCATGGCC GTGCGCACCC AGCATGGCCG CGACGAGTCC TCGTTCGATG CGCCGCCCCC CTCGGCCGTG GTGTTTGCCG AAAGCACGCA GGACGTGGCC GACGCGGTGA AGCTCGCAAG CGAGCACAGC GTGCCGGTCA TTCCCTTTGG CGTGGGCTCG TCGCTCGAAG GCCACCTGCT GGCGGTGCAG GGCGGCATCA GCATCGACGT CTCGCGCATG AACCGCGTAC TGTCGGTCAA TGCCGACGAC CTCACCGTGA CCGTGCAGCC CGGCGTCACG CGCAAGCAGC TCAATGACGA GATCAAGAGC ACGGGCCTGT TCTTTCCCAT CGATCCGGGT GCGGACGCTT CCATCGGCGG CATGACCGCC ACGCGCGCGA GCGGCACGAA CGCGGTGCGC TACGGCACCA TGCGCGAGAA CGTGCTGGCG CTCGAAGTGG TCACGGCCAG CGGCGACGTG ATCCGCACCG GCACGCGCGC GAAGAAGTCG TCGGCCGGCT ACGACCTCAC GCGCCTCATG GTGGGCAGCG AGGGCACGCT GGGCGTGGTC ACCGAAGTCA CGCTGCGCAT CTACCCGCTG CCCGAGGCGG TGTCGGCCGC GATCTGCTCG TTCCCGAGCA TCGAGGCCGC GGTGCGCACC ACCATCGAGA CCATCCAGCT CGGCGTGCCG ATTGCGCGCG TGGAGCTGAT CGACGTGAAC ACGGTGCGCA TGGTCAACAC CTACGCCAAG CTCGACCTGC GCGAAGAGCC GATGCTGCTG ATGGAATTCC ACGGCTCGCC GGCCGGCGTG AAGGAGCAGG CCGAGACGGT GCAGGAGCTC GCGAGCGGCC ATGGCGGCAA CGCCTTCGAA TGGGCCAGCA CGCCGGAAGA GCGCACACGC CTGTGGACCG CGCGGCACAA CGCCTACTTT GCGGCTGTGC AGTCGCGCCC CGGCTGCCGC GTGATCTCGA CCGACACCTG CGTGCCGATC TCGCGCCTGG CCGACTGCCT GCTCGACTCC GTGGCCGAAG CCGATGCCAG CGGCATCCCC TACTTCCTGG TCGGCCACGT GGGCGACGGC AATTTCCACT TCGGCTACCT GCTCGACCCG AACATCCCCG AAGAGCGCGT GAAGGCCGAG GAACTGAACC ATTCGCTCGT GAGCCGCGCA CTGGCGCTCG AGGGCACCTG CACCGGCGAG CACGGCGTGG GGCTGCACAA GATGGACTTC CTGGTGACGG AAGCTGGCGT GGGTGCGATC GACATGATGC GCACGATCAA GCGCGCGCTC GACCCGAAGA ACATCATGAA TCCCGGAAAG ATCTTCGCGC TCTGA
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Protein sequence | MNAPTPTSHL LPELHLRNVP DSLIEGLKAR FGSNCSTAMA VRTQHGRDES SFDAPPPSAV VFAESTQDVA DAVKLASEHS VPVIPFGVGS SLEGHLLAVQ GGISIDVSRM NRVLSVNADD LTVTVQPGVT RKQLNDEIKS TGLFFPIDPG ADASIGGMTA TRASGTNAVR YGTMRENVLA LEVVTASGDV IRTGTRAKKS SAGYDLTRLM VGSEGTLGVV TEVTLRIYPL PEAVSAAICS FPSIEAAVRT TIETIQLGVP IARVELIDVN TVRMVNTYAK LDLREEPMLL MEFHGSPAGV KEQAETVQEL ASGHGGNAFE WASTPEERTR LWTARHNAYF AAVQSRPGCR VISTDTCVPI SRLADCLLDS VAEADASGIP YFLVGHVGDG NFHFGYLLDP NIPEERVKAE ELNHSLVSRA LALEGTCTGE HGVGLHKMDF LVTEAGVGAI DMMRTIKRAL DPKNIMNPGK IFAL
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