| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0002 |
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| Symbol | |
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| ID | 7973960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1506 |
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| End bp | 2612 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644790604 |
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| Product | DNA polymerase III, beta subunit |
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| Protein accession | YP_002941931 |
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| Protein GI | 239813021 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
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| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0185617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGTTT TGAAGGCAAC CCAAGACAAG GTCCTCGCCG CGCTGCAGTC GGTGGCTGGC
ATCGTGGAGC GGCGCCACAC CTTGCCGATC CTGGCCAACG TGCTGATCCG CAAGACCGGC
GGCCAGCTGC AGCTGACCAC CAGCGACCTC GAGATCCAGA TCCGCACCAC GGCCGAGCTC
GGCGGCGACG AAGGCAACTT CACCACCACC ATCGGCGCGC GCAAGCTGAT CGACATCCTG
CGCACCATGC CGGCCGACCA GACCGTGAGC CTCGAATCGA GCGCGAGCAA GCTGGTGCTC
AAGGGCGGCA AGAGCCGCTT CACGCTGCAG TCGCTGCCGG CCGAGGACTT TCCGCTGGTG
CAGGAAGCCG CCAACTTCGG CCCGGTGTTC AGCGTGCCGC AAAAGACGCT GAAGGACCTG
CTCTCGCAGG TTTCCTTTGC CATGGCCGTG CACGACATCC GCTACTACCT GAACGGCATC
CTGTTCGTGG CCGAAGGCAA GCAGCTGAGC CTGGTGGCCA CCGACGGCCA CCGCCTGGCG
TTCTCGTCGG CCACGCTCGA CGTCGAGGTG CCGCGCCAGG AAGTCATTCT TCCGCGCAAG
ACCGTGCTCG AGATGCAGCG CCTGCTGTCG GACGCCGAAG GCGCCATCGA GATGCAGTTT
GCGAACAACC AGGCCAAGTT CAGCTTTGGC GGCATGGAGT TCGTCACCAA GCTGGTCGAG
GGCAAGTTCC CCGACTACAA CCGCGTGATC CCCAAGAACC ACAAGAACAG CGTCACGCTC
GGCCGCGCGC CGCTCTTGGC CAGCCTGCAG CGCACCGCCA TCCTGACGAG CGAGAAGTTC
AAGGGTGTGC GCCTGAACAT CGAGCCCGGC ACGCTGCGCA TCGCGTCGAA CAACGCCGAG
CAGGAAGAGG CCCAGGACGA ACTCGACATC GACTACGGCG GCGACGCCAT CGAGATCGGC
TTCAACGTGA CCTACCTGAT CGACGCGCTG TCCAACATGG ACCAGGACAT GGTCAAGCTG
GACCTGGCCG ACTCCAACAG CTCGGCCCTT TTGACCATCC CCGAGAACGC ATCCTTCAAG
TACGTCGTGA TGCCGATGCG AATCTAG
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| Protein sequence | MIVLKATQDK VLAALQSVAG IVERRHTLPI LANVLIRKTG GQLQLTTSDL EIQIRTTAEL
GGDEGNFTTT IGARKLIDIL RTMPADQTVS LESSASKLVL KGGKSRFTLQ SLPAEDFPLV
QEAANFGPVF SVPQKTLKDL LSQVSFAMAV HDIRYYLNGI LFVAEGKQLS LVATDGHRLA
FSSATLDVEV PRQEVILPRK TVLEMQRLLS DAEGAIEMQF ANNQAKFSFG GMEFVTKLVE
GKFPDYNRVI PKNHKNSVTL GRAPLLASLQ RTAILTSEKF KGVRLNIEPG TLRIASNNAE
QEEAQDELDI DYGGDAIEIG FNVTYLIDAL SNMDQDMVKL DLADSNSSAL LTIPENASFK
YVVMPMRI
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