Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II1066 |
Symbol | speF |
ID | 6962377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | + |
Start bp | 1159759 |
End bp | 1161951 |
Gene Length | 2193 bp |
Protein Length | 730 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 643382308 |
Product | ornithine decarboxylase |
Protein accession | YP_002265339 |
Protein GI | 209809800 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.585058 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATT TAAGTATTGC GATAAGTAAT AATCTTGGTG ATTACTTCAT GCCTCTCGCT GATATGTTGG TTGAAACGTT TAACCGAGAA TTAAGACCGA TTGATACTGT CGCATTAACG GATGTGAGTG CTGTTATTCT TTCCCTTGAT GATGTGTCAG GTAAGGTACA TCAACAAATT GAAGAAACGT GTTATGGCAT TCCAGTTTTT GTTATTTGTG GTGATGGTAC TCGCCAACTT TGCTCTTGTG ATTATGCAAA AGTAACCAGT GTTATTGATT TAACTCAACA ATCTATCTCA TATTATTGTC GTCAAATTAA CGAAGCTGCT CATAAATACG AATCAAAAGT GTTGCCACCA TTTTTTGAAA AAATAACCCG GTATGTTGAT CAAGGGAATG CGGCGTTTGA TTGTCCCGGA CACCAAGGAG GACAGTTTTT CAAAAAACAC CATGCTGGTA AACAGTTTTA TGATTTCTTT GGCGAGAATT TATTTCGAAG TGATTTATGT AATGCGGATG TGGCATTAGG GGATTTGTTA ATCCATGAAG GTCATGCGTG TGCAGCACAA AAACACGCAG CAAAAGTGTT TAATGCAGAT AAAACGTACT TTGTTCTTAA TGGGACATCT GCATCAAACA AGGTTGCTTG TAATGCAATT TTAACTCCGG GAGATTTGGT GCTATTTGAC CGAAATAACC ATAAATCAAA TCATCACGGT GCGTTATTTC AAGCGGGTGG GATTCCTGTT TATTTAGAAA CAGCTCGAAA TCCATACGGA TTTATTGGTG GCATTGATGA ACATTGTTTT GATGAAAGTT ATATTCGCGG TCAAATTGCA AAAACAGATC CAGAAAGAGC AAAAGAAGAA CGTCCATTCA GAATGGCGAT TATTCAACTA GGAACCTACG ACGGTACGAT TTATAACGCG CGTTTTGTAA TGGATAAAAT TGGCCACTTA TGTGACTACA TTTTATTTGA TTCTGCATGG GTAGGCTACG AGCAATTTAT TCCAATGATG AAAGATTGCT CTCCATTATT GTTGGATTTA AAACCTGAAG ATGCAGGTGT TTTGGTTACT CAATCGGTTC ATAAGCAACA AGCTGGTTTT TCTCAAACCT CCCAAATCCA TAAAAAAGAC CGTCATATCA AAGGACAAGC TCGTTACTGT AATCATAAAC GCTTTAATAA TGCCTTCATG ATGCATGCGT CAACCAGCCC ATTTTATGCT TTATTCTCAG CATTAGATGT GAATGCCAAA ATTCATGATG GTGCATCTGG CCGTAAGTTA TGGCATGAGT GTGTAAAAAT TGGTATTGAA ACGCGTAAAG AATTATTGAA TAGCTGTGAA TATATTACGC CATTTATTCC TGAAATAGTT GATGGCCAAT TATGGCAGGA CTATGACACG GAATTAATTG CAAATGAGAA AAAATTCTTC TTATTTAATC CTGAAGACAC ATGGCACAAA TTTGAAGGTT ACGGTAAGGA ACAATACTTT GTTGATCCAT GTAAATTGTT ATTAACGACA GCGGGGATTA ATGAACACGG GGATTATGCT GAATTTGGTA TTCCAGCAAC GCTACTCGCT AACTTCTTAC GTGAAAATGG CATTGTTCCT GAGAAGTGTG ATTTGAATTC TATTTTGTTC TTGCTTACAC CTGCTGAAGA CATGGCAAAA ATGCACCAAC TGGTGGCGCA AATTAATCGC TTCGAACAAT TTGTGAAAGA AGATGCTCCA TTGCAAGTGG TGTTACCAAC CGTGTATGAA GCAAATAAAG ATCGTTATAA AGGTTATACA ATTCAACAGT TATGTCTTGA AATGCATAAT ATGTACCGTG AGTTGAATGT AAAAGAGCTG CAACGTTGTA TGTTCCGTGA GGCCTATTTC CCTGAAATGA AAATGCTTCC TCAACAAGCA AACACTCAGT ATTTCCGTGG AGAGTGTGAA TACGTAGAAC TGAAAGAAGC AACGGGACGA ATCGCCGCTG AAGGTGCACT TCCTTATCCT CCGGGTGTGC TATGTGTGAT CCCTGGAGAA GCGTGGACCA GCCAAGTTAC CCAATACTTC TTAGCATTAG AAGAGGGGAT TAACCAGTTC CCAGGATTCG CTCCTGAAAT TCAAGGTGTT TATTTAGAAG AAGTAAATGG CCGAACTACC GCATTTTGTT ATGTCCTTAA CGAATCAAAC TAA
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Protein sequence | MKNLSIAISN NLGDYFMPLA DMLVETFNRE LRPIDTVALT DVSAVILSLD DVSGKVHQQI EETCYGIPVF VICGDGTRQL CSCDYAKVTS VIDLTQQSIS YYCRQINEAA HKYESKVLPP FFEKITRYVD QGNAAFDCPG HQGGQFFKKH HAGKQFYDFF GENLFRSDLC NADVALGDLL IHEGHACAAQ KHAAKVFNAD KTYFVLNGTS ASNKVACNAI LTPGDLVLFD RNNHKSNHHG ALFQAGGIPV YLETARNPYG FIGGIDEHCF DESYIRGQIA KTDPERAKEE RPFRMAIIQL GTYDGTIYNA RFVMDKIGHL CDYILFDSAW VGYEQFIPMM KDCSPLLLDL KPEDAGVLVT QSVHKQQAGF SQTSQIHKKD RHIKGQARYC NHKRFNNAFM MHASTSPFYA LFSALDVNAK IHDGASGRKL WHECVKIGIE TRKELLNSCE YITPFIPEIV DGQLWQDYDT ELIANEKKFF LFNPEDTWHK FEGYGKEQYF VDPCKLLLTT AGINEHGDYA EFGIPATLLA NFLRENGIVP EKCDLNSILF LLTPAEDMAK MHQLVAQINR FEQFVKEDAP LQVVLPTVYE ANKDRYKGYT IQQLCLEMHN MYRELNVKEL QRCMFREAYF PEMKMLPQQA NTQYFRGECE YVELKEATGR IAAEGALPYP PGVLCVIPGE AWTSQVTQYF LALEEGINQF PGFAPEIQGV YLEEVNGRTT AFCYVLNESN
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