| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0885 |
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| Symbol | |
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| ID | 6962222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 969713 |
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| End bp | 971851 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 643382153 |
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| Product | membrane associated GGDEF protein |
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| Protein accession | YP_002265184 |
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| Protein GI | 209809645 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.136885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATTTC TACAAATGCT AACTTTTCTA TTACTGATAG TTAGTTGGTC AACTTTAGCA
GCACATACCG TATCACTTAC TAAAGAAGAA CAAGAATATC TAAATTCCCA TCCCACACTG
ACGGTCTATA GTGACGAACA CTTTCCTCCT TATAGTTTCA TTGAAGACGC GGTTTTAAAG
GGCTATAGCC CTGATTATAT GCAATTAATA GCCGCACAAC TCAATATTGA AATTACCTAT
GTGAAGCACA CATCATGGGC GCAATCATTA ACGTTACTTA AAAATAATGA GATTGATATC
ATCACGAACA TTCGAAAAAC AGAAAGTAGA AAGAAATATT TAAATTTCAG TCATAATCCA
CTTTTCACGA TGACAAATGC CTTATTATCA AAAAAAACAA ATTCACCTTT ATATTTTAAT
AATATGGATC TAGGCACGTT TGATGATTAT CTTGCCGATA AAGTCGTTTC TGTCGTAGAA
CAATACGCCT ACCAAGATAT TTTATCTCAT CATTATCCAG ACTCTGATGT ATTACTCGCT
TCCAATACCC TTGAATCTAT CGAACAAGTC TTAAATGGCA ATGCAGATGC CGCGATAGGA
CCACTTGCTG TTTTTAATTA CTACCTTTCA AAATATTATT TCACGTCATT GAATACTAAA
GATGTTAATC ATCAAGCGCA CTTTACTGAT ACTTATAATT ACCTTGCAAC AAATAAGAAT
AATATTCTCC TAAAAAACAT ACTTGATAAA GCAATCGAGA GTATTTCTTT GGATGATATA
CATAATTTGA ATAATAAATG GCTAATAAAA AAACCCATTG CATTTAAAGA TGGTTTACTG
CCCTTATCTG ATGCAGAGTT GGAGTACTTA AACACAAAAT CACAATTCAA CTATTGCCTT
CCTAATGATC TCATGCCGTT TAGTGGCGTT AACAATGGCA ACCCCATAGG AATGTCAACG
TCTTTAATCT CATTAATTCA AGAGAAATTA AGTATTCCAT TTCAATTTAT TCCAACAAAA
GATTGGAACG AGAGTCTACA AAAAATTAAC AATAGAGAGT GTGATTTAAT CCTTCCTATA
GATATGACCA TCGCGACATT GAGTACATTA GATTATACAA AAACAGTCTA TAAAAGTGAC
ATTGTTATCG CGACGAAAAC CGACGCCCGC TTCATTACCA ACTTCAACCA CTTAAGAGAT
GTAAGCATTG GTATTATTAG GGGTTACTCT CAATCAAATA TGACGCCTCT ATTTCACCCT
TCTGTAAAAG TTGAGTTTGT AGATGATTTA GAAGAAGGCT TAACGAAAGT CAACAGTGGT
GAATTATTTG GTTTCATTGA TTCTGTTGAA ATATTAAGTT ACGCAATACA ACGTCATTAC
CCCTCTTTAA TGATCAGTGG CAAAGTAGAA AACACTTGGG ATCTTAGGAT AGGAACTCGT
AATGATGAAC CTTTATTAAA AAGCATCATT GAAAAAACAA TACATTCTAT TCCTCCTGAA
GAAACCAACA CACTCATTAA TAATTGGCTG TCAGTAAAAT ACACAAGTCC ATTTGATGTA
AAATTATTTA AAGTTTTACT TGGTGTTATC GTCGCGATCA TTGGTGCATT ACTGTATAGA
CAAAAACTAC TAAAAAAATA CAACACTAAG TTAATTCAAC TGTCCACTTA CGACAGCTTA
ACCTCTCTCT ATAACCGACG AGTAATAGAT ACTCATTTAG TTAAGCAGCA AAAATTATCA
CTTCGCACCG ATATGCCACT CAGCGTTATC ATGTGTGACA TCGATTATTT TAAAAAGATT
AATGATACTT TTGGACATAT TGCAGGTGAT GAAGTGATCG TTAATATGTC AGCACTCTTA
CTAAATAACA TAAGAACCTC TGACATTGTA GGTCGATGGG GGGGAGAAGA ATTCATTATC
ATTTGCCCTA ATACTCACTC ATCAGGAGCA AAGGTATTAG CGGAATGTCT ACGGAAGAAA
ATAGAGAAGA TGCCTGCAAC CAATGAGCAA ACAATCACAA TGAGCTTTGG GATAGCTCAA
TTTAATGAAA ATCTGAGTTA TGAAGAACTA TTAATTAAAG CTGATGCGGC TTTATACGCA
GCGAAAGAGC AAGGTAGAAA TAAAGTGGTC ATTGGGTAG
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| Protein sequence | MIFLQMLTFL LLIVSWSTLA AHTVSLTKEE QEYLNSHPTL TVYSDEHFPP YSFIEDAVLK
GYSPDYMQLI AAQLNIEITY VKHTSWAQSL TLLKNNEIDI ITNIRKTESR KKYLNFSHNP
LFTMTNALLS KKTNSPLYFN NMDLGTFDDY LADKVVSVVE QYAYQDILSH HYPDSDVLLA
SNTLESIEQV LNGNADAAIG PLAVFNYYLS KYYFTSLNTK DVNHQAHFTD TYNYLATNKN
NILLKNILDK AIESISLDDI HNLNNKWLIK KPIAFKDGLL PLSDAELEYL NTKSQFNYCL
PNDLMPFSGV NNGNPIGMST SLISLIQEKL SIPFQFIPTK DWNESLQKIN NRECDLILPI
DMTIATLSTL DYTKTVYKSD IVIATKTDAR FITNFNHLRD VSIGIIRGYS QSNMTPLFHP
SVKVEFVDDL EEGLTKVNSG ELFGFIDSVE ILSYAIQRHY PSLMISGKVE NTWDLRIGTR
NDEPLLKSII EKTIHSIPPE ETNTLINNWL SVKYTSPFDV KLFKVLLGVI VAIIGALLYR
QKLLKKYNTK LIQLSTYDSL TSLYNRRVID THLVKQQKLS LRTDMPLSVI MCDIDYFKKI
NDTFGHIAGD EVIVNMSALL LNNIRTSDIV GRWGGEEFII ICPNTHSSGA KVLAECLRKK
IEKMPATNEQ TITMSFGIAQ FNENLSYEEL LIKADAALYA AKEQGRNKVV IG
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