| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0732 |
|---|
| Symbol | kdsB |
|---|
| ID | 6962095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 807159 |
|---|
| End bp | 807908 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643382006 |
|---|
| Product | 3-deoxy-manno-octulosonate cytidylyltransferase |
|---|
| Protein accession | YP_002265044 |
|---|
| Protein GI | 209809506 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase |
|---|
| TIGRFAM ID | [TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTCA CAGTCATAAT CCCTGCTCGT TATCAATCGA CTCGTTTACC AGGTAAACCT
CTTGCTGATA TTTGTGGCAA GCCAATGATT CAATGGGTAT ATGAACAAGC ATCGAAAGCT
GGTGCTGATC GTGTGATTAT CGCAACAGAT GATTCTCGTA TTGAAGCGGT AGTGAAAGGG
TTTGGTGGTG ATGTATGCAT GACGTCTCCG AATCATGAAT CAGGTACTGA GCGTCTAGCT
GAAGTCATTG ATAAATGTGG TATAGCCTCT AATGAAATCG TGGTGAATGT ACAAGGGGAT
GAACCGCTTA TTCCACCAAG TATCATTCGA CAAGTAGCTA AAAATTTAGC TGACTCAATT
GCACCAATGG CAACATTAGC CGTGACAATT GATGAAGAAG AGGATGTATT TAACCCTAAT
GCTGTGAAAG TGGTTACCGA TGCAGAAGGG TATGCGTTGT ACTTTAGTCG TGCTGCAATC
CCTTGGGACC GTGATGCTTT TGCAAAAGGA GAGGCATTAA CGGCGAATCC ATTGTTGCGT
CATATCGGCA TTTATGCGTA CCGTGCAGGA TTTATTAATA CTTACATTAA TTGGCAGCCA
AGTGTACTTG AAAAAATAGA ATGCTTAGAG CAATTACGTG TACTTTGGTA CGGTGAAAAA
ATTCATGTCG CGGTGGCAAA AGAAGCGCCA GCGGCAGGTG TTGATACACA AGAAGATCTA
GATAAAGTCC GAGCTATTTT AGCGTTATAG
|
|---|
| Protein sequence | MSFTVIIPAR YQSTRLPGKP LADICGKPMI QWVYEQASKA GADRVIIATD DSRIEAVVKG
FGGDVCMTSP NHESGTERLA EVIDKCGIAS NEIVVNVQGD EPLIPPSIIR QVAKNLADSI
APMATLAVTI DEEEDVFNPN AVKVVTDAEG YALYFSRAAI PWDRDAFAKG EALTANPLLR
HIGIYAYRAG FINTYINWQP SVLEKIECLE QLRVLWYGEK IHVAVAKEAP AAGVDTQEDL
DKVRAILAL
|
|---|
| |