| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0694 |
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| Symbol | lolC |
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| ID | 6962506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 760059 |
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| End bp | 761267 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643381972 |
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| Product | lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_002265010 |
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| Protein GI | 209809472 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.361116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCATC CAGTATCAGT ATTTATAGGA TTACGATATT TAAGAGGGCG TTCTGGCGAT
AGGTTCAGTC GTTTTATCTC TTATATGTCA ACCGCAGGTA TCACGATTGG CGTGTTATCT
TTGGTGACCG TATTGTCGGT TATGAATGGG TTTGAAGGAC AACTTAAAGA TCGTATTTTA
GGGGTGTTAC CTCAAGCGGT TATTTCAAGT GAAAGCGATC AAATTATCCC ATCGGATGAT
GACCGAAATT ACGTGGCAAG TTTGCCCCAT GTGACTCAAG TTACGCCAGT CGTTCGAGGG
GAAGCGATTA TTCAGAGTGC GAAAGGCTTA AGCGCTGGCA TGCTTGTTGG TATTGACCCA
GATGAATATG ATCCTATTGC CTATGAATTA ATTTCTGGCA ATATCCGTCA ATTGGCTGCA
GGAGAATACG GTATATTTCT TGGCTCGAAG CTGGCTCGTG AATTAAATGT TCGTTACGGT
GATACGGTGC GAATAATGGT AACTAACGCC AGTCAATATA CACCTTTAGG TCGAATTCCT
AGCCAGCGCA ATTTTAAAGT GGTGGGTGTA TTTAATACGG GTTCGGATGT TGATGGTCAG
TTAATGGTCG CAAATATTCA AGACACTGCG CGTTTAATGA AGCTTAAAAA AGGCAATATT
ACTGGATGGC GTTTATTTTT CGATGACCCC TTCCAAGTCA CTGAATTGGC TAAATTGCCT
CTAAAAAACG AGATGACATG GAGTGATTGG CGTGATCAAC GCGGTGAATT ATTTCAAGCG
GTAAAAATGG AAAAAAATAT GATGGGCTTA ATGCTTGGTC TAATTGTTGC CATTGCCGCG
TTTAATATCA TCTCAGCTCT TATTATGGTG GTGATGGAGA AACAAGCGGA AGTCGCGATT
TTAAAAACCC AAGGAATGAC AAGTAACCAA GTGCTGTCTA TTTTTATGGT GCAAGGCGCA
AGTAGTGGTG TGATTGGATC GATTGTTGGT GGTGCACTAG GTGCATTATT TGCCAGTAAC
ATAAATGTTA TCCTTTCTAC ATTTGGGTTA TCTTTATTTA CTGTTGGTGG TTCTTTACCA
GCAGAGGTTG AACCATTACA AGTGTGTGTA GTCATTATTC TAGCCATTTT ATTAAGTTTA
TTAGCGACCG TATTCCCATC TTATCGAGCG GCAGTCGTAC AACCAGCAGA GGCATTAAGA
TATGAGTAA
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| Protein sequence | MFHPVSVFIG LRYLRGRSGD RFSRFISYMS TAGITIGVLS LVTVLSVMNG FEGQLKDRIL
GVLPQAVISS ESDQIIPSDD DRNYVASLPH VTQVTPVVRG EAIIQSAKGL SAGMLVGIDP
DEYDPIAYEL ISGNIRQLAA GEYGIFLGSK LARELNVRYG DTVRIMVTNA SQYTPLGRIP
SQRNFKVVGV FNTGSDVDGQ LMVANIQDTA RLMKLKKGNI TGWRLFFDDP FQVTELAKLP
LKNEMTWSDW RDQRGELFQA VKMEKNMMGL MLGLIVAIAA FNIISALIMV VMEKQAEVAI
LKTQGMTSNQ VLSIFMVQGA SSGVIGSIVG GALGALFASN INVILSTFGL SLFTVGGSLP
AEVEPLQVCV VIILAILLSL LATVFPSYRA AVVQPAEALR YE
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