Gene VSAL_II0621 details

Gene Information

• Locus tag: VSAL_II0621
• ID: 6962013
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: +
• Start bp: 673264
• End bp: 673821
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 643381906
• Product: putative outer membrane protein, OmpA family
• Protein accession: YP_002264944
• Protein GI: 209809406
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAC ACTTACTCGA AGTTATTATA GTAGGGAGCT TACTTAGTGG CTGTCAAAGT 
ACATCAGAAG ATGAGACTAC AGCAATTAAA TCGACACCTA CTATTGAAAG TTTTATTACT 
TACCATCACG ACGAACTGAA TGCGATTATC ACAGATGATA TTGGCAGTGT TGCACAAGTG 
AATGATGAAA TCATTGTGCT ATTAAATGGT GATACCAGTT TTGATTCAGG CAGTATTGTC 
ATTAAAAGTG AGAGTAAAGA CGCACTGACT CAATTAGCAC AATTACTGAA TAACAAGCCT 
CGTTCAGAGG TATTTATTGC AGGTCATACT GACAGCAGTG GCAGCAAGCA ATTTAATACT 
TCATTATCCA ATAAGCGAGC AAATTCAGTC TTGGCATTAT TGGAGCAGAA AGGCGTTGAT 
GCTAATCGAA TAAATACGTA TGGTTTTGGT GAAGCGGAAC CTATTGCCTC GAATATGAAT 
GCCAATGGAC GAAAGAAAAA CCGCCGAATT GAAATTCGTA TCACGCCAGT CGCTGATTTA 
TTCACTGACG AAGAATAG 

 

Protein sequence

MKKHLLEVII VGSLLSGCQS TSEDETTAIK STPTIESFIT YHHDELNAII TDDIGSVAQV 
NDEIIVLLNG DTSFDSGSIV IKSESKDALT QLAQLLNNKP RSEVFIAGHT DSSGSKQFNT 
SLSNKRANSV LALLEQKGVD ANRINTYGFG EAEPIASNMN ANGRKKNRRI EIRITPVADL 
FTDEE