Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0520 |
Symbol | tktA |
ID | 6961929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | - |
Start bp | 578747 |
End bp | 580738 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 643381810 |
Product | transketolase |
Protein accession | YP_002264848 |
Protein GI | 209809310 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0021] Transketolase |
TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCGTA AACATTTAGC TAATGCTATT CGTGCTCTAA GCATGGACGG CGTACAACAA GCAAACTCTG GTCACCCTGG CGCACCAATG GGCATGGCTG ACATCGCTGA AGTACTTTGG CGCTCTCACC TAAACCATAA CCCTGCAAAC CCTGATTGGG CTGATCGCGA CCGTTTCATT CTTTCGAATG GTCACGGTTC TATGCTGATT TATTCTCTGC TTCACCTTGC AGGTTATGAA TTATCAATTG AAGATCTTAA AAACTTCCGT CAATTGCATT CTAAAACACC AGGCCACCCT GAGTATGGTT ATGCACCAGG CATCGAAACA ACGACCGGTC CTCTAGGCCA AGGCATCACA AATGCCGTTG GTATGGCGAT GGCTGAAAAA GCATTAGCCG CGCAGTTCAA CAAAGAAGGC CACGACATCG TTGATCACTT CACTTATGCC TTCATGGGTG ATGGTTGTTT GATGGAAGGT ATCTCTCATG AGTCATGCTC TCTAGCGGGT ACGCTTGGTC TTGGTAAGCT GGTTGCTTTC TGGGATGACA ACGGCATCTC TATCGATGGT GAAGTGGAAG GTTGGTTCTC TGACGATACG CCTAAACGTT TTGAAGCGTA CGGCTGGCAT GTAATTCCTG CGGTTGATGG TCACGATGCA GATGCAATTA ATGCAGCAAT CGTAGCAGCA AAAGCAGACC CTCGCCCTAC TCTGATTTGT ACTAAAACTA TCATCGGTTT TGGTTCTCCA AACAAACAAG GTACACACGA CTGTCACGGT GCTCCACTAG GCTACGACGA AATTAAAGCA GCGAAAGCAC AATTAGGTTG GGAGTACGGT TCTTTTGAAA TCCCGTCGGA AGTTTACGCA GAATGGAACG CGAAAGACGC AGGCGCAACT AAGGAAGCGG CGTGGAATGA GAAGTTTGCA GCTTATGAAG CAGCCTACCC AGAACTTGCA GCAGAATTTA CTCGCCGCGT AAACGGTGAT TTACCAGCAG AGTGGGAAGA AAAAGCAAAT GCAATCATTG CAGAGCTTCA AGCTAATCCT GCAAACATCG CATCACGTAA AGCATCACAA AATGCATTAG AAGCGTTCGG TACCATGTTA CCTGAATTCA TGGGCGGCTC TGCTGACCTT GCTCCTTCTA ACCTAACAAT GTGGTCTGGT TCTAAGTCAC TAACCGCGGA TGATTTCTCT GGCAACTACA TTCACTACGG TGTTCGTGAA TTTGGTATGA CAGCTATCAT GAACGGCATG GCGTTACACG GTGGTTTCGT ACCTTACGGC GCAACATTCC TAATGTTCAT GGAATACGCG CGTAACGCAA TGCGTATGGC TGCACTGATG AAAATTCAGA ACATTCAAGT GTACACACAC GATTCAATCG GTCTAGGCGA AGATGGTCCA ACTCACCAAC CGGTTGAGCA AGTGGCTTCT CTACGTCTAA CACCAAACAT GAGCACATGG CGTCCATGTG ACCAAGTTGA ATCTGCTGTA GCATGGAAAC TTGCTATTGA ACGTCGCGAT GGCCCATCAG CACTTATCTT CTCTCGCCAA AATCTTGCAC AACAAGAGCG TGATGCAGAG CAAGTAGCGA ACATTGCTAA AGGCGGTTAT ATCCTTAAAG ATTGTGAAGG CCAACCTGAG CTTATCTTTA TTGCGACGGG TTCTGAAGTT CAACTTGCTG TTGAAGCCGC AGCGCAACTT ACGGCTGAAG GTAAAGCGGT ACGTGTTGTA TCAATGCCTG CAACTGATGC ATTTGATAAA CAAGATGCAG CGTACCGCGA AGCGGTTCTG CCATCATCAG TAACGAAACG TATTGCAATT GAAGCCGGCA TTGCTGACTT CTGGCACAAA TACGTTGGTT TTGGTGGTAA GATCATCGGT ATGACAACGT TTGGCGAATC AGCACCGGCT GAAGAGCTGT TCAAAATGTT TGGTTTCACT ACTGAAAATG CAGTGAAAAC AGCAAAAGAG CTTTTAGCTT AA
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Protein sequence | MNRKHLANAI RALSMDGVQQ ANSGHPGAPM GMADIAEVLW RSHLNHNPAN PDWADRDRFI LSNGHGSMLI YSLLHLAGYE LSIEDLKNFR QLHSKTPGHP EYGYAPGIET TTGPLGQGIT NAVGMAMAEK ALAAQFNKEG HDIVDHFTYA FMGDGCLMEG ISHESCSLAG TLGLGKLVAF WDDNGISIDG EVEGWFSDDT PKRFEAYGWH VIPAVDGHDA DAINAAIVAA KADPRPTLIC TKTIIGFGSP NKQGTHDCHG APLGYDEIKA AKAQLGWEYG SFEIPSEVYA EWNAKDAGAT KEAAWNEKFA AYEAAYPELA AEFTRRVNGD LPAEWEEKAN AIIAELQANP ANIASRKASQ NALEAFGTML PEFMGGSADL APSNLTMWSG SKSLTADDFS GNYIHYGVRE FGMTAIMNGM ALHGGFVPYG ATFLMFMEYA RNAMRMAALM KIQNIQVYTH DSIGLGEDGP THQPVEQVAS LRLTPNMSTW RPCDQVESAV AWKLAIERRD GPSALIFSRQ NLAQQERDAE QVANIAKGGY ILKDCEGQPE LIFIATGSEV QLAVEAAAQL TAEGKAVRVV SMPATDAFDK QDAAYREAVL PSSVTKRIAI EAGIADFWHK YVGFGGKIIG MTTFGESAPA EELFKMFGFT TENAVKTAKE LLA
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