Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0504 |
Symbol | |
ID | 6961915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | + |
Start bp | 563172 |
End bp | 566165 |
Gene Length | 2994 bp |
Protein Length | 997 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 643381795 |
Product | signal transduction protein, histidine kinase |
Protein accession | YP_002264833 |
Protein GI | 209809295 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.284164 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAATA CTGACTTATA TTTTAAAACT AGAGCTAGGA CTATCGATCA CTTAGGACGA GAACAAATTG CAGACTGTCC GACAGCAATC TCTGAACTGT GGAAAAATGC TTACGATGCT GATGCTGATG AAGTTGCTCT TCATATATTA GATGGAGAGA AATCAATTGC CGCAATCGTA GATAATGGTT TTGGCATGAA TGCTAGTGAT TTTGAAGAAA AATGGTTGAC TGTTGGTACT GAATCTAAAA TAGAGTCTCT AAACTCGAAC GAACAAGTTA TACGTAAATA TAACCGTCAG AAACAAGGAC AAAAAGGAAT TGGGCGTCTT TCCTGTGCTG CACTTGGTCA TCTTTTATTG TTAATAAGTA AGGCTGAAGG TCATCCATTT GTTGTTAGCT TAATAGATTG GCGATTGTTT GAAAACCCTT TCATTATGTT ACATGATATT TCAATTCCTG TGGCAGAAGT TGTTAGCATT GAAGAACTAT ATGGTGAAAT AGTTCATTTA TGTGAGCGTT TGCTATTCAA TGTTACGCCT ACTCGAGAAG ATAATTCAGC AAGAGCTAGC AGACTTCGTG ATGCATGGAA AATGTACGCA GAATATGAAA TAAATGAACA AAAAAAGCAG AACTCTGAAT TAATTGGATT TAAATCTACG CATGATTTGA TTATAGAACA GACAAATAGT TCTTTATTTA CTGAGCGTGT AGTAAGAACT TGGCAAGTTG CAAATGATAC GTCTTCCACA GGTACAGCAA TGTTTATGGT TGGTATTCCT GATGACTTAG AAGATCAATT GGTACTTGAA TCAATTCAAG ATGTAGATGA TGCAACAGCT CGAGCAAAGC TTAAATTACT TGAAACATTG TCAAATTTTA CGGACCCATT TGTAAAACCT AAAGAGAAAA AGAATGATCC ATTTCTCACG AGTGTTACTG CATGGAATGG GCAGTTACAA AGAGAATTAG TAAGTGATAT TCGTGAGTTT GATATTAGTG ATTTAGAGCA AATGGAACAC TTAGTTGATG GGCATGTGGA TGAAGAAGGT TATTTCAGAG GAACTATTAA AGCATTTGGT CAAGTATATG AAAACCAAGT CATAAAGCCG AAGCAAAAAT ATAGAACACG AATTGACTCA AGATTTGGTG CATTTGATAT TAGAATTGGT GGTTTTGAAG GGCAAAAAAA TAGATCAAGT ATGCCTGAAA CCTTGTGGAA TAATATTCAA AATAAGTCTG ATTTACATGG CGGTTTACGG ATTTATAGAG ATGGATTACG AGTAATGCCT TATGGGCGTG ATGATAGTGA TTTTTTTGAA ATAGAAAAAA GACGTACAAA TAATGCTGGT CGTTACTTCT GGTCGTCTCG TAAAACATAT GGGCGTATTA GTATATCTCG TTTAGGCAAC CCTAATTTAA AAGATAAAGC AGGTCGTGAA GGATTGCTTG ATAATCGTGC AGCAATGTTG TTTAGAGAGA TAATTATTGG AATTTTGATC CAAACAGCAG AACAATATTT TGGCCGAAAG TCAGATATTA GACAAGAGGC TTTAGAAGAT ATTGCCGCAC AACGAGCGGA AGAAAAAGCT AAGTTAGACA GAAAAAAACT TTTAAGAAAC GAGCGAAATA GAGTTAAAAA AGGAATACAG ACTCAACAAC CAGAATTATC CGCATTTTTA GATGAGCTTG AAGAGTTACA GGCCGATTTA GCTCATGGAG AGGAAATAAT TAATCTCCAG CAAGCTAAAG AGTTGAAAGG TTTATCGAAT AAATATAATG AAAAGCTTAA AAGTTTTTCT TTAAGTCCTG TACCACCAAG TTTAGGTACT ATAAAAGAAA ACTATGAGGG TTATCGTTCT TTAGAGCTAA GATCGCAAGA AATTACAAGG AGATTGAATG TTACTGCAGA TACCGCGATC AATAAATACA TAACTAAAAC CGACACTGAA GTTGCTAAAT CACAGTTAAA TACTAATCGA GGATATATTA CGGCAAAAGT TAAGAAATTG GCACTGGAAG GACGAACCTT ATTAAAAAGT GAGTTAGAAA GATTTGAACA ATTAGTAACT AGTTGTAATA AGGCTTATGA TATTGCCTTA TCTGAGGTAA TGCGAGATTT AGAGCTTGGT AAACTAACTT CATCTGAGGC TATGAAGCAA ATTGATGATG AGTATCAAAA ACAAGAAATA AATAATGAAC AAGCATTAAA GCCATATGTA ACAGCCTTAA ATAGTATTAA AAATGCAATA GATTTAGAAG GATTAGCCAT TGAAAGTTTA CGTGAATCTA ATAAATGGCA ACAAGAAGCT ACTAGATTAA ATGGCTTAGC TCAGTTAGGT ATTACTGTAG AAATCATTGG TCATGAAATC GAAGGGCTTG ATATCACTAT GGCTCGTGGG ATCTCTGATT TAAGAAAAAC CCATTTAAAT GATGTTCAGA ATCAGTTAGT TGATTCTGTC GATTTTGCAC ACCAAAGCCT AAGTGATAAA TGGCGTTTTT TAACACCATT AAAACTTTCT GGTGAACATA CTAAAACTAA TGTTACTGGT CTTGCAATTA TTGATTATGT TCGGAATTTT TATGGAGATA GTTTAGCAAA ACGAAATATT AGTTTAACTA CTACAAGTTC TTTTGAGCAG TTTAATGTGC ATGACTCACC AGCAAGGTTA TATCCTGTAT TTATAAATTT AATAAACAAT TCAAGATATT GGTTAAATAT TAAAGGCGAT AACGTTAAAG AAATTTGTCT GGATTATAAA AATGGTGAAG TGGTCATTGC TGATAACGGC CCCGGTGTCG ATTTAGTTGA TTTAGAACGG TTATTTACAT TGTTCTTTAC TAAAAAGCAG AGAGGAGGCC GAGGGGTTGG GTTATATCTT AGTAAATCAA ATTTGGCCTT ATCTGGCCAT ACGATTCGTT ATATTACAAA TGATGATGAA AAATCACTAA ATGGTGCTAA TTTCGCGATA AAGATCGGAG GGCTTCTAAA ATGA
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Protein sequence | MANTDLYFKT RARTIDHLGR EQIADCPTAI SELWKNAYDA DADEVALHIL DGEKSIAAIV DNGFGMNASD FEEKWLTVGT ESKIESLNSN EQVIRKYNRQ KQGQKGIGRL SCAALGHLLL LISKAEGHPF VVSLIDWRLF ENPFIMLHDI SIPVAEVVSI EELYGEIVHL CERLLFNVTP TREDNSARAS RLRDAWKMYA EYEINEQKKQ NSELIGFKST HDLIIEQTNS SLFTERVVRT WQVANDTSST GTAMFMVGIP DDLEDQLVLE SIQDVDDATA RAKLKLLETL SNFTDPFVKP KEKKNDPFLT SVTAWNGQLQ RELVSDIREF DISDLEQMEH LVDGHVDEEG YFRGTIKAFG QVYENQVIKP KQKYRTRIDS RFGAFDIRIG GFEGQKNRSS MPETLWNNIQ NKSDLHGGLR IYRDGLRVMP YGRDDSDFFE IEKRRTNNAG RYFWSSRKTY GRISISRLGN PNLKDKAGRE GLLDNRAAML FREIIIGILI QTAEQYFGRK SDIRQEALED IAAQRAEEKA KLDRKKLLRN ERNRVKKGIQ TQQPELSAFL DELEELQADL AHGEEIINLQ QAKELKGLSN KYNEKLKSFS LSPVPPSLGT IKENYEGYRS LELRSQEITR RLNVTADTAI NKYITKTDTE VAKSQLNTNR GYITAKVKKL ALEGRTLLKS ELERFEQLVT SCNKAYDIAL SEVMRDLELG KLTSSEAMKQ IDDEYQKQEI NNEQALKPYV TALNSIKNAI DLEGLAIESL RESNKWQQEA TRLNGLAQLG ITVEIIGHEI EGLDITMARG ISDLRKTHLN DVQNQLVDSV DFAHQSLSDK WRFLTPLKLS GEHTKTNVTG LAIIDYVRNF YGDSLAKRNI SLTTTSSFEQ FNVHDSPARL YPVFINLINN SRYWLNIKGD NVKEICLDYK NGEVVIADNG PGVDLVDLER LFTLFFTKKQ RGGRGVGLYL SKSNLALSGH TIRYITNDDE KSLNGANFAI KIGGLLK
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