| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0429 |
|---|
| Symbol | rhlE |
|---|
| ID | 6961864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 484569 |
|---|
| End bp | 485825 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643381724 |
|---|
| Product | putative ATP-dependent RNA helicase 1 |
|---|
| Protein accession | YP_002264764 |
|---|
| Protein GI | 209809226 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTTG CTTCATTAGG GTTAACTACC GAGCTCGTTA ACATTGTTTC AGAATTGGGT
TTTACAGAGG CAACTCCTGT ACAACAGCAA GCTATCCCAC TCGTATTAAA AGGACATGAT
GTACTTGCAG GGGCACAAAC GGGTACAGGT AAAACGGCGG CCTTTGGTTT ACCATTAATT
CAACGGTTGA TTGAAAGCCC AAGTCCACGA ATTGCTAATT CTAAAGTTAT TCGTACGTTA
ATCTTGACGC CAACAAGAGA GTTGGCTCAA CAAGTGTTCG ATAGTTTGGT GACGTATACT
AAAAATACCG ATCTTAAGTG TGTTGTAGCG TATGGCGGCA CAAGTGTCAA AATACAAACA
GAAAACCTTA TTGGTGGTGC AGACATCTTA GTTGCTACAC CAGGGCGATT ACTTGATCAC
TTACACTTAA ACAATATAAC GTTAAATCAA GCTGAATACC TTGTTTTAGA TGAAGCAGAT
AGAATGCTTG ATATGGGCTT TATGCCTGAC ATTCAACGTA TTTTACGAAA AATGGCAAGC
AAGCATCAGA CGTTATTTTT CTCTGCTACG TTTGGCGATA AGATTAAAGA GATTGCTTAC
CGTATTCTTG ATAATCCAAA AGTGGTTCAA GTGACCCCTT CAAATAGCAC TGCAGATACT
GTTGAGCAAA TGGTTTATCC TGTCGATAAG CATCGTAAAA GCGAATTGCT TGCGTATTTG
ATTGGCTCTC GTAACTGGAA GCAAGTTTTA GTCTTTACAA AAACCAAGCA AGGTTCTGAT
GATTTAGTAA AAGAGCTTAA GTTGGATGGC ATTAAAGCGG CTTCTATTAA TGGTGATAAA
AGCCAAGGCG CTCGTATTCG AGCATTAGAA GAGTTTAAAA CGGGTAAAAT TCGTGCATTA
ATTGCGACTG ACGTTGCTGC TCGAGGCTTG GATATTGAAC AACTTGAATG CGTAATTAAC
TACGAATTAC CATTTAAAGC AGAAGATTAT GTTCATCGAA TTGGTCGTAC AGGCAGAGCT
GGGCATACTG GTAAAGCCGT TTCATTAATG AGTGCAGATG AAGATTACTT ATTAAAAGCG
ATTGAAACAT TATTAGATAC GCGTTTACCT CAAGAATGGT TAAAGGGTTA CGAACCAGAT
CCTAATGCAC CGAAAAAAGA GAATCAACCG AGACAAAGTC GTGGTCGTTC TTCAGATAAA
AGAAAAATGA AAGCAAAAAC AAACGTTCAT GCTAATCGCG GTAAATTCAA GAAATAA
|
|---|
| Protein sequence | MSFASLGLTT ELVNIVSELG FTEATPVQQQ AIPLVLKGHD VLAGAQTGTG KTAAFGLPLI
QRLIESPSPR IANSKVIRTL ILTPTRELAQ QVFDSLVTYT KNTDLKCVVA YGGTSVKIQT
ENLIGGADIL VATPGRLLDH LHLNNITLNQ AEYLVLDEAD RMLDMGFMPD IQRILRKMAS
KHQTLFFSAT FGDKIKEIAY RILDNPKVVQ VTPSNSTADT VEQMVYPVDK HRKSELLAYL
IGSRNWKQVL VFTKTKQGSD DLVKELKLDG IKAASINGDK SQGARIRALE EFKTGKIRAL
IATDVAARGL DIEQLECVIN YELPFKAEDY VHRIGRTGRA GHTGKAVSLM SADEDYLLKA
IETLLDTRLP QEWLKGYEPD PNAPKKENQP RQSRGRSSDK RKMKAKTNVH ANRGKFKK
|
|---|
| |