| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0291 |
|---|
| Symbol | |
|---|
| ID | 6961748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 324173 |
|---|
| End bp | 325054 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 643381592 |
|---|
| Product | HTH-type transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002264634 |
|---|
| Protein GI | 209809096 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAC GTTTGCAGTA TTTTAATACC ATTGTTGAAA CGGGAAATAT GTCAGAGACA
AGTCGTATAT TTGATGTACA ACCTTCTTCT ATTTCTCGAC AACTTGCAGT ATTAGAGAAT
GATCTTGGGG TCCGGCTTAT AAATAGAAAT AGCCGCAATA TTGCTCTGAC AGAAGCTGGG
CATCGCTTCT ATAGTTACTC TAAGCAAATT ATTTTAGATC TTGATGAAGC CAAGCGTGTG
ATTAATGATT TGCAACAAGT ACCAAGTGGT ATGCTTAATC TTAGTGTCAC TGTAGGGTTT
GGTGAAGCGG TGATTATCCC TTTACTGCCT AAATTTAAAG CCGCGTATCC TGATGTCGAT
TTAAGAGTTG AGATAACAGA AAGAATAGTT GATTTAATTG AAGAAAATAC AGATGTCGTA
ATTCGAAGTG GAAATTTAAC GGATTCTTCA ATGATCGCAA CTCAATTGGC TACTAATGAC
TTTATATTAT GCGCAAGCCC TATGTATTTA AAAGAAAATG GAACCCCTTT AGCTATAGAT
GACTTGGTTA ATTATCTTTG TATTAAATAC GGTTATGCAG GCTGGGGTAA TTGGTTTTTA
AAAGGCGAAA AATTAGAAAA AATTGAAATC GAAAATTCAA TAGAAGTTAA TACTGTGAAC
GGACAAAAGC AACTGGTTTT AAACCATGGA GGGCTAGCTT TAATTCCGCA TTGGGCTGTG
AAAAATGAAT TAGAAAACGG GGATCTTGTT CAAGTCATGC GAGACCATCA TTTTTGTCCA
TATGGAAAGG ATACCGCTGT TTATGCGATT TTTTTAAGAC GGGAACTTAT TTCGCCTAAA
ATTAGAGTTT TTCTGGATTT TTTAAAAGAA AACTTAAATT AA
|
|---|
| Protein sequence | MIKRLQYFNT IVETGNMSET SRIFDVQPSS ISRQLAVLEN DLGVRLINRN SRNIALTEAG
HRFYSYSKQI ILDLDEAKRV INDLQQVPSG MLNLSVTVGF GEAVIIPLLP KFKAAYPDVD
LRVEITERIV DLIEENTDVV IRSGNLTDSS MIATQLATND FILCASPMYL KENGTPLAID
DLVNYLCIKY GYAGWGNWFL KGEKLEKIEI ENSIEVNTVN GQKQLVLNHG GLALIPHWAV
KNELENGDLV QVMRDHHFCP YGKDTAVYAI FLRRELISPK IRVFLDFLKE NLN
|
|---|
| |