Gene VSAL_II0197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_II0197 
Symbol 
ID6961668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011313 
Strand
Start bp221796 
End bp222479 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content40% 
IMG OID643381510 
Producttranscriptional activator protein, response regulator 
Protein accessionYP_002264552 
Protein GI209809014 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR01387] heavy metal response regulator 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0086442 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACTAC TTATAATAGA AGATGAAACG AAAGCTGGAG ATTATCTAAA AAAGGGATTA 
ACAGAGTCCG GTTACACTGT TGATCTGTCG CGTGATGGCG TTGATGGTTT GTATAACGCA
ACGACATATC AATACGATTT AATTATCTTA GATGTCATGC TGCCAAAATT GAATGGGTGG
CAAATTTTGC AAACGCTCAG AAACTGCGAA AATAGCACGC CTATTATTAT GCTGACGGCA
AAAGATCAAG TAGATGATAG AGTAAAAGGG TTTGAACTCG GCGCGAATGA TTACCTAATC
AAGCCCTTTG CCTTTGCTGA ATTAAAAGCT CGTATTGAAA ATGCACTGAG ATCTCAAACT
GCAAACTCGC ACACCCAAAA AGTAAACGAG TTAGTCTTGT GTGATTTACA ACTCGACCTT
TTAAAACACA CTGCGACAAG AAATCACGAT AATATTACGC TAACAGCAAA AGAATTTTCA
TTACTCGAAT TGTTCATGCG AAAGCAAGGA GAAGTGCTAT CAAGAACCAC CATCGCTTCT
CTCATTTGGG ATATGAATTT CGACAGTGAC ACCAATGTCA TTGACGTTGC CGTTAAGCGA
CTCAGAGCAA AAATCGATAA ACCTTACGAC ACGCCATTGA TTCACACGGT GCGAGGAATG
GGTTATAAAA TGGACGAGGT GTGA
 
Protein sequence
MKLLIIEDET KAGDYLKKGL TESGYTVDLS RDGVDGLYNA TTYQYDLIIL DVMLPKLNGW 
QILQTLRNCE NSTPIIMLTA KDQVDDRVKG FELGANDYLI KPFAFAELKA RIENALRSQT
ANSHTQKVNE LVLCDLQLDL LKHTATRNHD NITLTAKEFS LLELFMRKQG EVLSRTTIAS
LIWDMNFDSD TNVIDVAVKR LRAKIDKPYD TPLIHTVRGM GYKMDEV