Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0197 |
Symbol | |
ID | 6961668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | + |
Start bp | 221796 |
End bp | 222479 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643381510 |
Product | transcriptional activator protein, response regulator |
Protein accession | YP_002264552 |
Protein GI | 209809014 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR01387] heavy metal response regulator |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0086442 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACTAC TTATAATAGA AGATGAAACG AAAGCTGGAG ATTATCTAAA AAAGGGATTA ACAGAGTCCG GTTACACTGT TGATCTGTCG CGTGATGGCG TTGATGGTTT GTATAACGCA ACGACATATC AATACGATTT AATTATCTTA GATGTCATGC TGCCAAAATT GAATGGGTGG CAAATTTTGC AAACGCTCAG AAACTGCGAA AATAGCACGC CTATTATTAT GCTGACGGCA AAAGATCAAG TAGATGATAG AGTAAAAGGG TTTGAACTCG GCGCGAATGA TTACCTAATC AAGCCCTTTG CCTTTGCTGA ATTAAAAGCT CGTATTGAAA ATGCACTGAG ATCTCAAACT GCAAACTCGC ACACCCAAAA AGTAAACGAG TTAGTCTTGT GTGATTTACA ACTCGACCTT TTAAAACACA CTGCGACAAG AAATCACGAT AATATTACGC TAACAGCAAA AGAATTTTCA TTACTCGAAT TGTTCATGCG AAAGCAAGGA GAAGTGCTAT CAAGAACCAC CATCGCTTCT CTCATTTGGG ATATGAATTT CGACAGTGAC ACCAATGTCA TTGACGTTGC CGTTAAGCGA CTCAGAGCAA AAATCGATAA ACCTTACGAC ACGCCATTGA TTCACACGGT GCGAGGAATG GGTTATAAAA TGGACGAGGT GTGA
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Protein sequence | MKLLIIEDET KAGDYLKKGL TESGYTVDLS RDGVDGLYNA TTYQYDLIIL DVMLPKLNGW QILQTLRNCE NSTPIIMLTA KDQVDDRVKG FELGANDYLI KPFAFAELKA RIENALRSQT ANSHTQKVNE LVLCDLQLDL LKHTATRNHD NITLTAKEFS LLELFMRKQG EVLSRTTIAS LIWDMNFDSD TNVIDVAVKR LRAKIDKPYD TPLIHTVRGM GYKMDEV
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