| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0114 |
|---|
| Symbol | exbD2 |
|---|
| ID | 6962457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 139969 |
|---|
| End bp | 140373 |
|---|
| Gene Length | 405 bp |
|---|
| Protein Length | 134 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643381436 |
|---|
| Product | TonB system transport protein ExbD2 |
|---|
| Protein accession | YP_002264478 |
|---|
| Protein GI | 209808940 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTTG GCCGTCGTTC TTCAAATCAA GAAGAAGCAC AGATCGATTT AACATCAATG
CTCGATATCG TATTTATCAT GCTGATATTT TTTATTGTGA CTAGCTCATT TGTGCGTGAA
TCAGGGGTAG AAGTGAATCG CCCTCAAGCA AGCAATGTAT CGAGTCAAAA AGACGCGGGT
ATCTTTGTTG CTATTACGGC TTCAAACGAT ATTTTCATTG ATAAACGCAT GGTGGACGCC
GAGCGAGTTC AAGCCATATT AGAGCATTTA TTATTAGAAC AACCTGATGC GTCGCTCGTC
ATTCAAGCTG ATGAACATGC GTATAACGGC ACGGTTGTGA AAGTGATGGA TGCGGCAAAA
GGGGCTGGTG TTAAAGGCAT CGCATTGGCT GCGGAGAAAA ACTAA
|
|---|
| Protein sequence | MRLGRRSSNQ EEAQIDLTSM LDIVFIMLIF FIVTSSFVRE SGVEVNRPQA SNVSSQKDAG
IFVAITASND IFIDKRMVDA ERVQAILEHL LLEQPDASLV IQADEHAYNG TVVKVMDAAK
GAGVKGIALA AEKN
|
|---|
| |