| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I3047 |
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| Symbol | |
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| ID | 6988051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 3298213 |
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| End bp | 3302067 |
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| Gene Length | 3855 bp |
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| Protein Length | 1284 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 643381318 |
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| Product | putative helicase |
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| Protein accession | YP_002264364 |
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| Protein GI | 209696433 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.149054 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATATTC ATCTTTACTT ACGAGCCCTC ATGCCTCTTA CTGTTATTAA TCCCAATACC
CCTAATCATA TTGCTCTCTA TGCCGCTTTG CTTTGTAGCC AAAATACGCT GAATAAAGTC
AAAAAAGCCA TGATGCAGAT CTTAGCTGAG CCTGAATCAC CACAAAGTGA GTTGAACTTT
ACTCAAGCAC TTTCCGATCT ATGCCAGCAA AAAATGATGT ATCAAGAGGG CAATAAGCTA
TGCTTTACTC CGCAAGGGTT AACGCGGGCG CTATTGGCAT TTGGTGAGGT AAATAATACC
CAGTTAGAAG ATTTGGTTGA GTCGAATATC GATAATCCTA AAGCGCCTTA TGTGGGTTTG
TTTGCGGTGG CTTCTGATTA TGATTGGCTG ATGGATTTAT TGCATGAACT AAATAACCCA
TCAGATATCG GCTTGGCTTT TGATATTCTC TGCTCTGATC CAATCAGTTG GCAGTTAAAT
GATCGGGTTT GGGTTAATCT GTTTGCTCAA GTGATGATGG TTAACTGGTA TAAGCTATTA
AACGATCGCC CAAATAAGAT GGAATTTACC ACGGCCATTG AGGTGATGGA TGAGTGGCGA
ATTAACCAGT TTGGTGTGAA CTTTCAGTTT GATAAGTGGT GCTTCGCCCC AAGAATAAAG
AGTGACTATC TGCTTTCCGC TTCCCATTTT GATAGCACTT ATCTTCGTCA TCGAGACGCT
TTTCGTCCTA TTAATTCAGA TAAAATCTCT TTTACTCAAC TGTGTGATTT GGCATTGGTG
AGTGTGCTTG ACCCTTCTCT TACCTCTGCA ACCAAAGCAA AAATGAGTAT GGCTTTCTAT
AGCATGCCAG AGCTTTCTAC GCAGTATTGG CGTGCGTCTA TCAATCTTAT TACTGCCAGT
GACAGTGTGT TGGCGCACTA TTTTGAGGAC CCTGAACTCT GGCTAGATTC ATTAGTGGAT
AGTCGAGGCC AGGTGGCGTG GGGGCGCATG TTAATTGAAT CAATTATCGC TTATCGTCTG
CGTGATAATA CCAATGTCTG GATTGGGTTA ATGACCTTAG CTCGTACTTC AGAGATGAGG
TCGTTATTAG ATCACCCGGA TAACTTTGCA CTGGCTCAGG TGGCAAAAAA TGCGTTAACT
CGTTTGCTGG ATCAAGACAA TCCATTAATT CATGTCGCTT CGCCTTGGCA GCAATGGTTA
ACGCGCATTG ACGGCACATT AAATCCAATA GCGGTAAAGC AAGAACGTTT GATTTGGCAG
TTGGATCCAT TGGCATCGAA AGTTGAAGCG AAAATTCAGG CGAAAAGTAA GCGAGGTTGG
AGTCAGGGTC GCAAGGTGCC GCTAGAGAAG TTTGGTTATA AACACAAAGA AATCCTCAGC
ACCAGTGACA CAACGATCTT ATCTGCTGCT TCGTATGAGG GCATGATTTG GGGCGGTGGT
TCAAAAATCA CTAAGCCCGT TGCTCATGCC TTGTGTGATG CCGATAATCT TTATGATCAT
CAGGGTGAAC AAGTCTCTTT TTATCGAGAA ACGCCGTTGT TGGTGTGGCG CACAGAGGGG
GCAGAGTTGG CCTTTGAGGC GTACCCTTAT TATTCAGAGC GGACTTGTAC TCAATCGTGG
TTGCATCAAT CGAATGACAG TGTGTTTCGT TTTATTGATG CGCCAGAGCA GATCTCTGAA
TTTTTAGAAG AGTTAAGAGT TCGAGATCCA CATTTTCCAG CAACTCAAAC GGCAGAGTTA
ATTGCGGTGT TGGGCGAGCA CGTTCATTGG TTTGATATTG ATGAGCAACG AGGAACCGTG
ACGCGTGGTG AGTGTGTGGC CGAGCCTCAA TTGTGGCTAG CGTGGAATGG AATATCGTTG
GATGTCGCGA TTGAGTATGG TTCGTTAGAC AACAAAGTCA GTTGGTCGCC GGGTAAAGGC
AACGAGTGGG AAAGTGGCTT TGATGGGATC TGGTATCAAC GGGATCTAGC GAATGAAAAA
CATCACGCAA AGTTATTAGT TAAAGAGTTA GGCTTAGAAA AAAACAGCAC ATTTACTTGG
CAAATTGAGG GTGAGTCCGC GTTGGAGTTA ATTACTAAGA TTGATGGGGA GTTGAGCGCA
AATCTGCATT GGAAAGCCGA CAGCCAGCAA GTGAAGGTGA TTGGGGTTGA TGATTTTTCA
ATGTCGATTA ATCAAAAGCA GAATTGGTTT GAGGTGAATG GACGAGTTCA GATTGACAGC
GATTTGGAGA TGGATTTACG TCAGTTGCTG GCTCATCATC GTACTGGCTT TGTGAGCTCT
GATAATTCGT CGTTAACCTT ATTGATTTCA GATCAACTGC GTCGCCAATT GAGCTTATTG
GACAGCTTGG TGGATGACGA TCAATTGGTT GATCTGCGCA TGGCGTATCC GTTGCAAAAG
TTGGTGGAGT CGATGGCGGC CAACAGTGAT GACGCGTGGG ATAAGTTAGT TGAAGAGTGG
CGAGTGAAGC CAGAGTTAGA TGCTGAGTTA TTAGCGCCTC TGCGTGATTA CCAAAAAGAG
AGCGTGGAGT GGGCGGCGCA TTTATCGCAA CACGGTTTTG GTGCCTGTCT TGCGGATGAC
ATGGGATTGG GTAAGACGTT GCAAGGCTTG ACGTTACTGA GCCATTATCG TGCGCAAGGA
CCAAGTATGG TGGTGTGCCC GAAATCGGTG TTGACCAATT GGCAGCAAGA AGCCGAGCGT
TTTACACCGC AGTTGGTAAT GATTGATTTG GAAGCGTGTG ATGATCGGTT AACGGCAATT
AAAGCGGCGG GGCCAAATGA TGTCGTGGTA CTGAGTTATG GTTTAGTGAC GAGATTAGCC
GAAGCGTTGA ATGAGGTTGA GTGGAATTGT GCGGTATTGG ATGAAGCTCA GCAGATTAAG
AACCCACAAG CGAAGCGCTC TAAAGTGGTG TTTGGTTTGG AAGCGGCGCA TCGTTTTGCA
TTATCAGGAA CACCGGTTGA AAATCATCTG GTTGAGTTAT GGAGTTTGTT CTCCTTCTTG
AATCCGGGGT TGCTTGGCGA TCTTAAATCG TTCCGTTCTA AATATTCACA AGCGGCGAAG
CAGCAACAAG ATATGCTGCG ATTAAAAGCC TTGGTGAGTC CGTTTATTAT GCGTCGTACC
AAAACGGAAG TATTGACTGA ATTGCCTGCA AAAACTGAGG TAGTGCATCA TGTTGAGTTA
TCGAATAAAG AACGAACCGC GTATGAAGCG GTAAGAAAAG AATCACTCGC GAATTTAAAA
AGTGCATCGA GCCGTGGTGT GGTTGAGGTC TTTGCTGCAT TAACTAAGTT GCGTCAAATT
TGTTGTGATG TGAGCTTGGT GTTTGATTCA ATGCAAGGAG AGGCGAGCAC CAAGTTATCA
GAAGCGCAGA GTTTGATTGA AGAAGCGCTA GATGGTGATC ATAAAGTGTT GGTGTTCAGC
CAATTTGTTG GGGTGTTAAA ACGTTTTTCG GCCCAATTAA CCGAGTCGAA TATTTCGTTC
AGTTATTTGG ATGGCAAGTT GAGTACCAAA CAGCGTCAGG CGGCCATTGA TTCATTTAAA
GACGGCACTA ACTCTGTGTT TTTGATCAGC TTAAAAGCCG GCGGTACAGG GTTGAATTTG
ACCGAAGCGG ATACCGTGAT CCACATTGAC CCATGGTGGA ACCCAGCGGT AGAAGACCAA
GCCAGTGATC GCGCTTACCG TATGGGCCAA CAAAAGCCTG TCACGGTTTA TCGTTTAGTA
ACAAAAGATA CGATTGAAGA GAAGATCATC GCGCTGCACC ATGATAAACG TGATTTGGCG
GATCAGGTGT TGTCAGCGAC GTCGAGCAGT AGAACGTTAG ATCCACAGCA GCTATTAGGG
TTGTTGGAGG GGTAA
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| Protein sequence | MYIHLYLRAL MPLTVINPNT PNHIALYAAL LCSQNTLNKV KKAMMQILAE PESPQSELNF
TQALSDLCQQ KMMYQEGNKL CFTPQGLTRA LLAFGEVNNT QLEDLVESNI DNPKAPYVGL
FAVASDYDWL MDLLHELNNP SDIGLAFDIL CSDPISWQLN DRVWVNLFAQ VMMVNWYKLL
NDRPNKMEFT TAIEVMDEWR INQFGVNFQF DKWCFAPRIK SDYLLSASHF DSTYLRHRDA
FRPINSDKIS FTQLCDLALV SVLDPSLTSA TKAKMSMAFY SMPELSTQYW RASINLITAS
DSVLAHYFED PELWLDSLVD SRGQVAWGRM LIESIIAYRL RDNTNVWIGL MTLARTSEMR
SLLDHPDNFA LAQVAKNALT RLLDQDNPLI HVASPWQQWL TRIDGTLNPI AVKQERLIWQ
LDPLASKVEA KIQAKSKRGW SQGRKVPLEK FGYKHKEILS TSDTTILSAA SYEGMIWGGG
SKITKPVAHA LCDADNLYDH QGEQVSFYRE TPLLVWRTEG AELAFEAYPY YSERTCTQSW
LHQSNDSVFR FIDAPEQISE FLEELRVRDP HFPATQTAEL IAVLGEHVHW FDIDEQRGTV
TRGECVAEPQ LWLAWNGISL DVAIEYGSLD NKVSWSPGKG NEWESGFDGI WYQRDLANEK
HHAKLLVKEL GLEKNSTFTW QIEGESALEL ITKIDGELSA NLHWKADSQQ VKVIGVDDFS
MSINQKQNWF EVNGRVQIDS DLEMDLRQLL AHHRTGFVSS DNSSLTLLIS DQLRRQLSLL
DSLVDDDQLV DLRMAYPLQK LVESMAANSD DAWDKLVEEW RVKPELDAEL LAPLRDYQKE
SVEWAAHLSQ HGFGACLADD MGLGKTLQGL TLLSHYRAQG PSMVVCPKSV LTNWQQEAER
FTPQLVMIDL EACDDRLTAI KAAGPNDVVV LSYGLVTRLA EALNEVEWNC AVLDEAQQIK
NPQAKRSKVV FGLEAAHRFA LSGTPVENHL VELWSLFSFL NPGLLGDLKS FRSKYSQAAK
QQQDMLRLKA LVSPFIMRRT KTEVLTELPA KTEVVHHVEL SNKERTAYEA VRKESLANLK
SASSRGVVEV FAALTKLRQI CCDVSLVFDS MQGEASTKLS EAQSLIEEAL DGDHKVLVFS
QFVGVLKRFS AQLTESNISF SYLDGKLSTK QRQAAIDSFK DGTNSVFLIS LKAGGTGLNL
TEADTVIHID PWWNPAVEDQ ASDRAYRMGQ QKPVTVYRLV TKDTIEEKII ALHHDKRDLA
DQVLSATSSS RTLDPQQLLG LLEG
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