| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2976 |
|---|
| Symbol | trkH |
|---|
| ID | 6988004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 3223557 |
|---|
| End bp | 3225014 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643381251 |
|---|
| Product | Trk system potassium uptake protein TrkH |
|---|
| Protein accession | YP_002264301 |
|---|
| Protein GI | 209696370 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTTC GATCAATAAT CCGCATTGTG GGTATTTTAC TCGCGGTGTT CAGTTTTTTC
ATGTTAGCTC CCGCTCTTGT CGCGTTTATT TATCGTGATG GTGCTGGTGT GCCTTTTGTT
ATTACTTTTT TCTTGTTACT TGCCGGTGGA GGGCTACTTT GGTTCCCCAA TAGACAGCAT
AAACAAGAGT TAAAATCTCG CGATGGGTTT CTCATTGTGG TCTTATTTTG GATGGTAATT
GGTAGTGCGG GTGCATTGCC GTTTTTATTA TCTGGTTCAC CTGATATTTC GATAACCAAT
GCCTTTTTTG AGTCCTTTTC TGGTTTGACG ACAACAGGTG CTACCGTTCT TACGGGATTA
GACCACTTAC CAAAAGCGAT TTTATTCTAT CGACAACTGC TTCAGTGGTT TGGCGGTATG
GGTATCATTG TACTCGCCGT TGCGATTCTT CCTGTTCTTG GTATCGGTGG GATGCAGCTT
TATCGTGCTG AAATCCCTGG GCCGGTAAAA GATTCTAAGA TGACTCCGCG AATAGCTGAA
ACGGCTAAGG TGCTTTGGTA TATCTACTTA ACATTAACCA TTGCTTGTAC ATTGGCATTT
TGGGCGGCGG GGATGGATTG GTTTGACGCC ATCACTCATA GTTTCTCAAC AATTGCTATT
GGTGGTTTCT CTACCCATGA TGCCAGTATG GGGTATTTCA ATAGCCCCGT AATTAATGCC
ATTACAGTGG TGTTTTTACT TATTTCAGCG TGTAACTTCT CTCTACACTT TGCCGCTTTT
GCGTCTGGTG GTGTGCATCC CAAGTATTAT TGGAAAGATC CAGAATTCAG AGCATTTATC
TTCATTCAAG TGTTGTTATT TTTAATTACG TTTTTGTTGT TATTAAAACA CAGTACTTAT
GATTCGATTG GTACTGCGGT TGATCAGGCG TTATTTCAAA CCGTTTCTAT CTCAACAACG
GCGGGTTTTA CAACCACCAG TTTTGCTGAG TGGCCATTAT TTTTACCTGT GTTGTTGCTG
TTTTCTTCAT TTATTGGTGG TTGTGCGGGG TCTACTGGCG GCGGAATGAA AGTGATACGT
ATTTTGTTAC TGTCATTACA AGGAATGCGT GAGCTTAAAC GATTGATTCA CCCAAGAGCC
ATTTATACGA TTAAGATTGG CAGCAAGGCA TTACCACAAC GAGTGGTTGA TGCTGTATGG
GGATTTTTCT CTGCTTATAC ATTAGTGTTC GTCATTTGTA TGTTGGCATT GATTGCGACA
GGCATTGATG AATTGACCGC ATTCTCAGCG GTGGCGGCAA CATTAAACAA TTTAGGGCCT
GGTTTAGGTG AGGTTGCTGT ACACTTTGGT GATATAAATG ATTCAGCGAA ATGGATTTTA
ATCATCTCGA TGTTATTTGG TCGTTTGGAA GTGTTTACAC TCCTTATTTT ATTTACGCCG
ACGTTTTGGC GTAGTTAA
|
|---|
| Protein sequence | MQFRSIIRIV GILLAVFSFF MLAPALVAFI YRDGAGVPFV ITFFLLLAGG GLLWFPNRQH
KQELKSRDGF LIVVLFWMVI GSAGALPFLL SGSPDISITN AFFESFSGLT TTGATVLTGL
DHLPKAILFY RQLLQWFGGM GIIVLAVAIL PVLGIGGMQL YRAEIPGPVK DSKMTPRIAE
TAKVLWYIYL TLTIACTLAF WAAGMDWFDA ITHSFSTIAI GGFSTHDASM GYFNSPVINA
ITVVFLLISA CNFSLHFAAF ASGGVHPKYY WKDPEFRAFI FIQVLLFLIT FLLLLKHSTY
DSIGTAVDQA LFQTVSISTT AGFTTTSFAE WPLFLPVLLL FSSFIGGCAG STGGGMKVIR
ILLLSLQGMR ELKRLIHPRA IYTIKIGSKA LPQRVVDAVW GFFSAYTLVF VICMLALIAT
GIDELTAFSA VAATLNNLGP GLGEVAVHFG DINDSAKWIL IISMLFGRLE VFTLLILFTP
TFWRS
|
|---|
| |