| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2891 |
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| Symbol | vcmD |
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| ID | 6989262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3136681 |
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| End bp | 3138012 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643381171 |
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| Product | multidrug efflux pump |
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| Protein accession | YP_002264221 |
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| Protein GI | 209696290 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.466203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGCAAG TCTTAAAAAA CCTTACATTA CACCGACGAG TATTAGCTCT GGCTATTCCA
ATGGTGTTGT CGAATATTAC AACGCCACTA CTTGGATTAG TTGATGCTGC TGTTATTGGG
CATTTAGATC AGGCGTGGTA TTTAGGTGGG GTTGCGGTTG GCGGCACGAT GATCAGCGTG
ACTTTTTGGT TACTTGGTTT TTTGCGTATG GCAACCACAG GACTTTCTGC TCAGGCCTAT
GGTGCTGAAG ATAAAAAATT ATTAAGCCAA ACCTTTTCTC AGGGTATTTT TCTAGCTTTA
TGTTTTTCAT TCATTCTGCT TATTTTTCAT CAGCCTCTCT CCTACGCTAT TTTTTCTTTC
AGCAATGCAA CTCCAGAAGT GAAGATGTAT GCAGAGCAAT ATTTCTCTAT TCGAATCTGG
AGTGCACCAG CGGCATTGAG TAATTTGGTC ATCATGGGCT GGTTACTCGG GACTCAGAAT
GCTCGTTATC CAATGTGGTT AGTGATTATT ACAAACAGCA TCAATATCGT TCTCGATTTA
TTATTTGTTG TTGGGTTTAA TTGGAAGGTT GAAGGGGCGG CATTTGCTTC TGTATTAGCC
GACTATGCCG CTTTGTTACT TGGTTTATTT TTTGTCTTTA AACAAAAAGA AACATTGTAT
TTACCTCGTT TCTTGATGCC TCTGTCTGAA TTGTTACTTG GGTTTAAACG CTTATTTAAA
TTAAATCGAG ATATTTTCTT ACGATCATTA TGCCTTCAAG CGTGCTTTAC TTTCATGACA
TTTAAGGGGG CGTCATTAGG TGTTGATATT GTGGCAGCAA ATGCGGTATT GATGAGTTTT
TTGATGATGA TATCTTATGG CATGGATGGT TTTGCTTATG CTATGGAAGC CATGGTGGGA
AAAGCGATTG GTGCAAAAAG CAAAACTCAG TTATCAGAAT CATTGATTGG AATTACCTTT
TGGAGCTTTG CCATTAGCTT ATTATTAAGT GTGGCTTTTG GTGTGTTTGG TGCTGGTTTA
ATTGGGATGA TTTCTTCAAT CACAGAAGTG CAAAATACGG CGTTAATCTA TTTACCTTGG
CTTATTGCTA TGCCGTTGAT ATCCATGTGG TGTTTTTTAC TTGATGGTAT TTTTGTTGGT
GCGACCAAAG GGTCTGAGAT GAGAAATTCC ATGTTTATCG CGATGCTGAC GTTTTTCGTT
GTGTGGTGGC TAATGACGCC TTATGGTAAC CATGCGTTAT GGGCTGCAAT TATCTCGTTT
ATGGGGATGC GAGGTATAAG TCTTGCGATT ACTTTTTATG TTCAATGGAA AAAAGGAGTT
TTCCTATCAT AG
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| Protein sequence | MWQVLKNLTL HRRVLALAIP MVLSNITTPL LGLVDAAVIG HLDQAWYLGG VAVGGTMISV
TFWLLGFLRM ATTGLSAQAY GAEDKKLLSQ TFSQGIFLAL CFSFILLIFH QPLSYAIFSF
SNATPEVKMY AEQYFSIRIW SAPAALSNLV IMGWLLGTQN ARYPMWLVII TNSINIVLDL
LFVVGFNWKV EGAAFASVLA DYAALLLGLF FVFKQKETLY LPRFLMPLSE LLLGFKRLFK
LNRDIFLRSL CLQACFTFMT FKGASLGVDI VAANAVLMSF LMMISYGMDG FAYAMEAMVG
KAIGAKSKTQ LSESLIGITF WSFAISLLLS VAFGVFGAGL IGMISSITEV QNTALIYLPW
LIAMPLISMW CFLLDGIFVG ATKGSEMRNS MFIAMLTFFV VWWLMTPYGN HALWAAIISF
MGMRGISLAI TFYVQWKKGV FLS
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