| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2866 |
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| Symbol | rpoB |
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| ID | 6989181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 3104688 |
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| End bp | 3108716 |
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| Gene Length | 4029 bp |
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| Protein Length | 1342 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643381139 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_002264196 |
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| Protein GI | 209696266 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.131495 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CTTATACAGA GAAAAAGCGC ATCCGTAAGG ATTTTGGTAA GCGTCCACAA
GTGTTGGACA TACCATACTT ACTATCGATC CAGCTTGATT CTTTTACTAA ATTTATCGAG
CAAGATCCTG AAGGGCAATA CGGTCTTGAG GCTGCTTTCC GTTCTGTTTT TCCAATTCAG
AGCTACAATG GCAACTCTAA GCTAGAATAC GTTAGCTATA ATCTCCGTGA GCCAGAATTT
GATGTTAAAG AATGTCAAAT CCGCGGTGTT ACCTATTCTG CACCTTTACG CGTTAAATTA
CGTTTAGTTG TGTACGATAA AGATGCACCT GCAGGCACGG TAAAAGACAT TAAAGAACAA
GAAGTCTACA TGGGCGAAAT TCCGCTTATG ACTGACAACG GTACTTTTGT AATCAATGGT
ACTGAAAGGG TTATCGTATC CCAGCTGCAC CGCAGCCCAG GTGTCTTCTT CGACAGCGAT
AAGGGTAAAA CCCATTCATC TGGTAAAGTT CTTTATAACG CGCGTGTAAT TCCTTACCGT
GGTTCATGGT TAGATTTCGA ATTTGATCCT AAGGATAACT TATTCGTACG TATCGACCGT
CGTCGTAAAT TACCAGCAAC GATCATCTTA CGTGCACTTC GTAAAACAAC AGAAGAAATC
TTAGATCTAT TCTTCGATAA AGTTGTATTT GAAGTGAAAG ACCAAACGTT AATGATGGAA
TTACTTCCTG AACGTTTACG TGGTGAGACT GCAACATTTG ATATTGAATC GAACGGCAAA
GTTTATGTTG AAGCCGGTCG TCGTATTACT GCGCGTCATA TTCGTCAATT GACGAAAGAC
GAAGTAAATA ATATCGAAGT ACCAGTAGAT TATATCGTAG GTAAAGTGGC TTCTCACGAT
TATGTGAATG AAGACACTGG TGAGATCATT ATCGCGGCTA ACCAAGAGTT TAGCTTAGAA
GATCTTGCTA ATTTATCTCA AGCTGGCCAC AAAAAGATTG AAGTGTTATT TACGAATGAC
CTTGATCATG GTGCATACAT CTCTGACACA TTACGTGCAG ATTCAACTGT TGACCGTTTA
TCGGCACTTG TTGAAGTTTA TCGTATGATG CGCCCAGGCG AGCCACCAAC AAAAGAAGCT
GCTGAATCAT TATTTGAAAG CCTATTCTTC TCTGAAGATC GTTATGACTT ATCGACTGTT
GGTCGTATGA AGTTCAATAG CTCAATTGGT CGTGATAATG GTGAAGGCGC AGGCATCCTT
GATGAAACAG ACATCATCGA AGTTATGCGT AAACTGATCG ATATTCGTAA CGGTAAAGGC
GAGGTTGATG ATATCGATCA CCTTGGTAAC CGTCGTATTC GTTCTGTTGG CGAAATGGCA
GAAAACCAAT TCCGTGTTGG TTTAGTTCGT GTAGAACGTG CTGTTCGTGA ACGTCTAAGT
CTTGGTGATC TTGATGCAAT TATGCCTCAA GATCTTATCA ACGCTAAGCC GATTTCAGCT
GCAGTTAAAG AATTCTTTGG CTCTTCACAG CTGTCTCAGT TTATGGATCA GAATAACCCA
TTGTCAGAAG TTACGCACAA ACGTCGTATT TCTGCTTTAG GGCCTGGCGG TCTAACTCGT
GAGCGTGCTG GTTTCGAAGT TCGTGATGTA CACGCGACTC ACTACGGTCG CCTATGTCCA
ATCGAAACTC CTGAAGGACC AAACATCGGT CTAATTAACT CATTATCAGC GTATGCTCGA
TGTAATGAAT ATGGTTTCCT AGAGACTCCA TATCGTCGTG TTGTTGATAA TATCGTGACT
GAAGATGTAG ATTACCTATC TGCGATTGAA GAAGGTACAT TTGTTATTGC ACAGGCGAAT
GCCGTGTTAA CAGAAGAAGG TACTTTCGCT GATGAATTAA TCATCGCTCG TCAGAAAGGT
GAATCAGGCC TACATCCACG TGAACACATC CAATATATGG ATGTCGCGAC AAACCAAGTT
GTATCTGTAG CTGCATCGCT TATCCCGTTC CTAGAACACG ATGATGCGAA CCGTGCCCTA
ATGGGTGCGA ACATGCAGCG TCAAGCTGTA CCTACATTAA GAGCTGATAA GCCTTTAGTT
GGTACTGGTA TTGAGCGTTG TGTAGCAATC GATTCAGGTG TAACCGCTGT TGCTAAACGT
GGCGGTATGG TTCAGTCAGT AGATGCTTCT CGTATCGTTA TCAAAGTGAA CGAAGAAGAA
TTGGTACCTG GCGAAGCTGG TATCGATATC TACAACTTAA CTAAATACAC TCGTTCTAAC
CAAAATACGT GTATCAACCA ACGTCCAACA GTGCTTCCTG GTGAACCTGT TACTCGTGGT
GATGTTCTTG CTGATGGTCC GTCAACGGAT CTTGGTGAGC TTGCACTTGG TCAGAACATG
CGTATCGCAT TTATGCCTTG GAATGGTTAT AACTTCGAGG ATTCAATCCT TGTATCTGAG
CGTGTAGTTC AGGAAGACCG TTTCACGACG ATTCACATTC AAGAACTATC TTGTGTGGCT
CGTGATACTA AACTTGGCTC TGAAGAGATC ACTGCAGATA TCCCTAACGT AGGCGAAGCT
GCTCTGTCTA AACTTGATGA ATCAGGTATT GTTTATATCG GTGCTGAAGT TAAGGGTGGA
GACATCTTAG TTGGTAAAGT AACACCTAAA GGTGAAACTC AACTGACTCC AGAAGAGAAG
CTACTACGAG CTATCTTTGG TGAAAAAGCA TCAGATGTTA AAGATTCTTC TCTACGTGTA
CCAAACTCTG TTTCAGGTAC TATCATTGAC GTACAAGTAT TTACGCGTGA TGGTGTTGAA
AAAGATAAAC GTGCTCTAGA AATCGAACAA ATGCAGCTTA AAGAAGCTAA GAAAGACATC
ACTGAAGAAT TCCAGATTCT TGAAGGTGGC TTATTAGCAC GTGTTCGCAC ACTTCTAACG
CTTGCAGGTA CTTCTGAAGT TAAACTTGAT GCGATGGATC GTAAGCAGTG GTTAGAAATC
ACGCTTGATG ATGAATCACA ACAAAATCAA CTTGAGCAGC TTGCTGAGCA ATATGATGAA
CTTAAAGCTG AGTTCGATAA GAAATTCGAA ACTAAACGTC GTAAGATCAC TCAAGGTGAT
GATCTTGCAC CAGGCGTACT GAAAATCGTT AAAGTTTACC TAGCGGTAAA ACGTCGTATT
CAGCCTGGTG ATAAGATGGC GGGTCGTCAT GGTAACAAGG GTGTAATCTC TAAGATTAAC
CCTGTTGAAG ACATGCCTTA TGATGAAAAA GGTCAGCCAG TAGATATCGT TCTGAACCCA
CTGGGTGTAC CTTCTCGTAT GAACATCGGT CAAATTCTTG AAGTTCATAT GGGTCTTGCT
GCGAAAGGTG TTGGTGATAA ACTTAACCAA ATGCTTAAAG AGCAACAAGA ACTGCATAAG
TTCCGTAACT TCTTACAAAA AGTATACGAT CTTGGTGAAA CTCGCCAAGA AGTAGACATC
GCTGCACTGT CTGATGACGA AGTTCGTACA TTAGTTAAGA ACTTACGCGG TGGTTTACCA
ATCGCAACAC CAATCTTTGA TGGTGCTCCA GAATCATCAA TTAAAGAACT ATTAAAACTT
GTTGATCTGC CAGAATCTGG TCAGTTGAAA TTGTTTGATG GTCGTACTGG TGATGCGTTT
GAGCGTCCTG TAACTGTTGG TTACATGTAT ATGCTAAAAC TAAACCACTT AGTCGATGAC
AAGATGCACG CACGTTCTAC CGGCTCTTAC AGCCTTGTAA CTCAGCAGCC ACTTGGTGGT
AAAGCTCAGT TCGGTGGTCA GCGTTTCGGT GAGATGGAAG TATGGGCACT TGAAGCATAT
GGTGCTGCAT ATACTCTACA AGAAATGCTA ACAGTTAAGT CGGATGACGT GAACGGTCGT
ACTAAGATGT ATAAAAACAT CGTAGATGGC GATCATCGTA TGGAACCAGG TATGCCAGAA
TCATTCAACG TATTGTTGAA AGAGATCCGC TCACTTGGTA TCAACATCGA GTTAGAAGAC
GAAGAATAA
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| Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFTKFIE QDPEGQYGLE AAFRSVFPIQ
SYNGNSKLEY VSYNLREPEF DVKECQIRGV TYSAPLRVKL RLVVYDKDAP AGTVKDIKEQ
EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARVIPYR
GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALRKTTEEI LDLFFDKVVF EVKDQTLMME
LLPERLRGET ATFDIESNGK VYVEAGRRIT ARHIRQLTKD EVNNIEVPVD YIVGKVASHD
YVNEDTGEII IAANQEFSLE DLANLSQAGH KKIEVLFTND LDHGAYISDT LRADSTVDRL
SALVEVYRMM RPGEPPTKEA AESLFESLFF SEDRYDLSTV GRMKFNSSIG RDNGEGAGIL
DETDIIEVMR KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVRERLS
LGDLDAIMPQ DLINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEVTHKRRI SALGPGGLTR
ERAGFEVRDV HATHYGRLCP IETPEGPNIG LINSLSAYAR CNEYGFLETP YRRVVDNIVT
EDVDYLSAIE EGTFVIAQAN AVLTEEGTFA DELIIARQKG ESGLHPREHI QYMDVATNQV
VSVAASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGIERCVAI DSGVTAVAKR
GGMVQSVDAS RIVIKVNEEE LVPGEAGIDI YNLTKYTRSN QNTCINQRPT VLPGEPVTRG
DVLADGPSTD LGELALGQNM RIAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELSCVA
RDTKLGSEEI TADIPNVGEA ALSKLDESGI VYIGAEVKGG DILVGKVTPK GETQLTPEEK
LLRAIFGEKA SDVKDSSLRV PNSVSGTIID VQVFTRDGVE KDKRALEIEQ MQLKEAKKDI
TEEFQILEGG LLARVRTLLT LAGTSEVKLD AMDRKQWLEI TLDDESQQNQ LEQLAEQYDE
LKAEFDKKFE TKRRKITQGD DLAPGVLKIV KVYLAVKRRI QPGDKMAGRH GNKGVISKIN
PVEDMPYDEK GQPVDIVLNP LGVPSRMNIG QILEVHMGLA AKGVGDKLNQ MLKEQQELHK
FRNFLQKVYD LGETRQEVDI AALSDDEVRT LVKNLRGGLP IATPIFDGAP ESSIKELLKL
VDLPESGQLK LFDGRTGDAF ERPVTVGYMY MLKLNHLVDD KMHARSTGSY SLVTQQPLGG
KAQFGGQRFG EMEVWALEAY GAAYTLQEML TVKSDDVNGR TKMYKNIVDG DHRMEPGMPE
SFNVLLKEIR SLGINIELED EE
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