Gene VSAL_I2726 details

Gene Information

• Locus tag: VSAL_I2726
• Symbol: rpe
• ID: 6988387
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2952552
• End bp: 2953229
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643380995
• Product: ribulose-phosphate 3-epimerase
• Protein accession: YP_002264062
• Protein GI: 209696132
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0036] Pentose-5-phosphate-3-epimerase
• TIGRFAM ID: [TIGR01163] ribulose-phosphate 3-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGATT TTTTGATCGC ACCATCTATT CTCTCTGCTG ATTTTGCTCG TCTTGGTGAA 
GACGTAGACA AAGTATTAGC GTCAGGCGCT GATGTGGTTC ACTTTGATGT GATGGATAAC 
CACTACGTAC CAAACTTAAC GTTCGGTGCG CCGATTTGTA AAGCGTTACG TGATTACGGT 
ATTACCGCTC CAATTGATGT GCATTTGATG GTGAAACCAG TGGACAGTAT TGTTCCTGAG 
TTTGCAAAAG CCGGTGCAAC AATGATCACT TTCCATGTTG AAGCATCTGA ACATGTTGAT 
CGTACCCTTC AGTTAATTAA AGAGCACGGC TGTAAAGCGG GTGTTGTTCT TAATCCTGCA 
ACGCCATTAT CCTGTCTTGA CTACATTCTT GATAAAGTCG ATATGATCTT ACTTATGTCA 
GTTAATCCGG GTTTTGGTGG TCAGTCATTT ATTCCTAGTA CGTTAGATAA ATTGCGTGCA 
GTACGTAAAT TGATCGATGA CTCTGGTCGT GATATCCGTC TTGAAATTGA TGGTGGCGTA 
AAAGTGGATA ACATTCGTGA AATCGCAGAA GCGGGCGCGG ATATGTTTGT GGCAGGCTCT 
GCAATCTTTA ATCAACCAAA TTATAAAGAA GTGATAGATG AAATGCGTGC TGAACTCGCT 
AAAGTGAAAG GTAATTAA 

 

Protein sequence

MKDFLIAPSI LSADFARLGE DVDKVLASGA DVVHFDVMDN HYVPNLTFGA PICKALRDYG 
ITAPIDVHLM VKPVDSIVPE FAKAGATMIT FHVEASEHVD RTLQLIKEHG CKAGVVLNPA 
TPLSCLDYIL DKVDMILLMS VNPGFGGQSF IPSTLDKLRA VRKLIDDSGR DIRLEIDGGV 
KVDNIREIAE AGADMFVAGS AIFNQPNYKE VIDEMRAELA KVKGN