Gene VSAL_I2704 details

Gene Information

• Locus tag: VSAL_I2704
• ID: 6987889
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 2927417
• End bp: 2929306
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 643380974
• Product: membrane associated GGDEF protein
• Protein accession: YP_002264041
• Protein GI: 209696111
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGTTCAA CTGACATGAA TAAGAAAAGT TTTAAAATAG TAGCTTATTC TAGCTGTGTT 
TATCTTGTGT TATCAATGAT AACGCTGGTG TATTTTTATA GTGAATATCA GAAAGAAAAA 
CTGGTTATTA TTGAGCAAGT TCAAAATGAA TCAACTCGAC AGTTAGCTTA TACACATCAT 
GAATTTGATG AGTTATTAAC TCGTATCCAA AATACATTAA GCTTACTCTC TGACAGCCGA 
CCTGTTTATG ATTATTTTTT ATATCCTTCC AATCGTGCTA AAGCAGCCGT AGAAAGCTCA 
TGGGTTAATT TGGTTAAAGC TGAAAAGTTC TTCTCTCAAT TAGAGCTTAT CGATAACCAA 
GGGATTGCTT TATTTAGCTT ATCTTATAAC GCCATCAATA ATGAGACATC TAAACATAAT 
TTGCCCTTAA CTGTCGTGAA TCACTCCTTA TTAACAACGT TATCCCAATT AGCTGCCGGA 
CAAGTATTTT CGGAAGGGGT GGTCTTAAAT GAAAAGTTAG CGACGTCGGG TGTTTATAAG 
CCAGTCATGC AAATTATTAT TCCAATTGAA GTGTTAGGAT CTCGTAAAGG GTATGTTGTT 
GCTGAACTGA GTGAGACGAG AATTGAAAAT GTGATTAAAT TTTCTCCTAC GCTTAATATC 
TCTCCCTCTA TCGTTAATCA AGATGGTTAT TATTTATTAA CGAATAAGCG AAATAAAATG 
TTTGGTCATC TTGTTAATGG AAGAGAAGAT CAAACATTAA AGGCTGAAAA TTCGGAGTTA 
TGGCGCTTAA TGACTACTCA AAAAACAGGC AGTGCTTACA TTGATAAAAA TATTTTTTCG 
TTTTATAAAT TCTCTCTTAA TCAAAAAGTG CCAAATAAAG AAGTGTACTT TTTATTGGAT 
TACTCTGAAG AAAGCTTGAA TGTTTTATTT CAAGAAGCGA AGTCTGAATT AATCGAAGAA 
ACAACGATTG TATTATTGTT ATTAAGCTTA ATCGTACTTC CTTGTGGGGT CGCTTTAACA 
TTATGGGATA AATCAAATAT TGAAAGCCAA CTTGCAAAGT CAGCTCTTGA GGGGATGACG 
GCTGTGGTGA TCACAGATAA ATATCAACGA ATTATAAAAG TAAATTCAGC GTTTTCTTTA 
ATTAGTGGAT GCTGTGCATC AGAGACGATA GGAAAAACCA CATTTGATGT ATTGAAGTCA 
GGTGTTGAAC ATTCAGAAAA GCGAGTTCAG AACTGGAAAC AAGTCGAAGA ACTGGGTGTT 
TGGCAAGGTG AAATCGAAGC ATTAAATAAA GACGAAAAAA AATTAAGCTT GCTGGTAAGA 
ATTCAAGTTG TTAAAAATAA GCGTAAAGAC ATTCAATATT ATATTTTGTC TTATATTGAT 
ATTACTCAAC GAAAATTATT AGAAAAAGAA TTGCGTTATT TAAGTGAAAA AGACAGTTTA 
TCGGATTGTT GGAATCGCAG AAAATTCGAG TTTGAATTAG AGAATCAGAC GTTATTAACG 
AATCGTTATT ACCCAGTACA TCAATGTTGT TTAGCCATTC TTGATATTGA CTGGTTTAAA 
AGAATTAATG ACACTAAAGG CCATGACGTT GGTGATAAGG TCATTTTTCT TGTCGCAGGT 
ATACTGCAAA AAGGCTCTAG AGATGGAGGA GAAGAGTTTG CGATAATTAT GCCTCATACT 
GAGTTGAAAG ATGCAGAGAG GGTCGTCAAT CGCTTACGTG TCGCGGTTTC TCAATTGGAA 
GAATATCAAT TAACGATTAG TGGTGGTTTG GCTGATATAG GTATTGCAGG TAATGATGCT 
TATAAATGTG CCGACTTAGC ATTGTATGAA TCAAAAACCA ATGGACGTAA TCTTATTTCT 
ATTTGTAGTG ATTTAGGGGA TTTGGCTTAG 

 

Protein sequence

MSSTDMNKKS FKIVAYSSCV YLVLSMITLV YFYSEYQKEK LVIIEQVQNE STRQLAYTHH 
EFDELLTRIQ NTLSLLSDSR PVYDYFLYPS NRAKAAVESS WVNLVKAEKF FSQLELIDNQ 
GIALFSLSYN AINNETSKHN LPLTVVNHSL LTTLSQLAAG QVFSEGVVLN EKLATSGVYK 
PVMQIIIPIE VLGSRKGYVV AELSETRIEN VIKFSPTLNI SPSIVNQDGY YLLTNKRNKM 
FGHLVNGRED QTLKAENSEL WRLMTTQKTG SAYIDKNIFS FYKFSLNQKV PNKEVYFLLD 
YSEESLNVLF QEAKSELIEE TTIVLLLLSL IVLPCGVALT LWDKSNIESQ LAKSALEGMT 
AVVITDKYQR IIKVNSAFSL ISGCCASETI GKTTFDVLKS GVEHSEKRVQ NWKQVEELGV 
WQGEIEALNK DEKKLSLLVR IQVVKNKRKD IQYYILSYID ITQRKLLEKE LRYLSEKDSL 
SDCWNRRKFE FELENQTLLT NRYYPVHQCC LAILDIDWFK RINDTKGHDV GDKVIFLVAG 
ILQKGSRDGG EEFAIIMPHT ELKDAERVVN RLRVAVSQLE EYQLTISGGL ADIGIAGNDA 
YKCADLALYE SKTNGRNLIS ICSDLGDLA