Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2276 |
Symbol | ccmF |
ID | 6988427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 2450835 |
End bp | 2452793 |
Gene Length | 1959 bp |
Protein Length | 652 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643380554 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_002263638 |
Protein GI | 209695708 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCCAG AACTCGGTCA TTTTGCGATG ATTGCCTCAT TAGGACTTGC TGTCCTATTG AGTATATTGC CTATGTACGG TGCAAGCCGT GGCAATAAAG CATTAATGCA AAGTGCAAGA CCTCTCGCTT GGGGGATGTT CCTACTCCTC AGTTTATCAT TTGGGATCTT AATGTGGGCA TTCTACGTTA ACGATTTCAC TCTCCAATAC GTCGCAAGTA ACTCAAACAG TTTACTGCCT TGGTATTATC GTTTAACGGC GGTGTGGGGG GCTCATGAAG GTTCATTGCT TCTTTGGGTA TTAATTCAAG CAGGTTGGAC TGTGGCTGTA GCGACATTTA GTCGTGGTAT GCCTCAAGAG TCTGTTGCTC GAGTATTGGC AGTGATGGGC TGGATTACCC TTGGTTTCTT ACTGTTTATC ATTTTAACAT CGAACCCATT TTTACGTACT CTGCCATTTT TTCCAATTGA TGGACGTGAT TTAAACCCAT TACTTCAAGA TCCTGGGTTG ATCATTCATC CACCAATGCT TTATATGGGC TACGTTGGTT TCTCTGTTGC GTTCTCATTT GCTATTGCGT CATTAATGAC GGGTCGATTA GATACTGCAT GGGCTCGTTG GTCTCGTCCT TGGACGATTG CTGCATGGTC ATTTCTAACC GTAGGTATCT CTCTAGGTTC GTGGTGGGCA TATTATGAAC TTGGCTGGGG TGGTTGGTGG TTCTGGGATC CAGTAGAAAA CGCATCATTC ATGCCTTGGC TTGTTGGTAC CGCATTAATG CACTCATTAG CGGTAACCGA GAAACGTGGT ACGTTTAAAG CTTGGACCGT TCTACTTGCA ATATCAGCAT TCTCATTAAG TTTATTAGGT ACGTTCCTTG TTCGTTCTGG CATCTTGGTA TCGGTTCATG CCTTTGCTTC TGATCCCGCT CGAGGCATGT TCATCCTTGC CTTCTTAGTG ATGGTTATCG GTGGTTCATT ACTGCTGTTT GCTTTAAAAG GTTCTTCAGT TCGTGTTCGT GGTAATTTTG CTCTCTTTTC TCGTGAAAAT GCATTATTAG CCAATAATAT TTTATTAATA ACGGCTTTAG TTGTTGTTCT TGTTGGTACG TTATTACCCT TAGTACATAA GCAACTTGGT TTAGGCTCAG TCTCAATCGG TGCACCGTTC TTCGATATGC TATTTGCATG GTTGATGATC CCATTTGCAT TTTTATTGGG TATTGGTCCT CTGATCCGTT GGAAGAAAGA TAATTTAAAT AGTCTTGTTA AACGTATGGT AATCACAGGA GCGGTAACCG TTCCTCTTGC TGCTGTAATG ATGGTTATCT TTGCAGATAA GTTCCTATTT ATGGCTTACC TAGGTTGGAT GATGTCAATT TGGATCATTA TTCTTCATGG TTTTGAAATG TATGAACGTG CAACTCACCG TCATACACTT GCTGTTGGTT TAACGAAACT TGGCCGCAGT CATTGGGCGA TGGTATCTGC ACATATCGGT CTTGCTATTA CGATTATCGG TATTGCAATG GTACAAAACT ACAGTATTGA AAAAGACGTA CGTTTGGCAC CTGGTGAGCA CATTGAAATG AATGGCTACC AATTCTACTT TGCTGGCATT CGTGATACTG ATGGTCCTAA CTATGATGGT TATACCGCTG ATTTTGATAT TTCGTTAGAT GGTAAAGCCA TCAATACATT ACATGCTGAA AAACGTTTCT ACGCAACGTC TGGAGCGATG ATGACGGAAG CGGCGATTGA CCGTGGCATT ACTCGTGATC TATACATTGC GATGGGTGAG CGTTTAGATG ACAACCGTTC ATGGGCTGTA CGTATTTATT ACAAACCGTT CGTTCGTTGG ATCTGGGCTG GTACTCTATT CATGGCATTA GGCGGTGTGT TAGCAATGTC TGATAAGCGT TACCGTTTCC GTAAAACATC GAAAAAACAG GAGGCATAA
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Protein sequence | MIPELGHFAM IASLGLAVLL SILPMYGASR GNKALMQSAR PLAWGMFLLL SLSFGILMWA FYVNDFTLQY VASNSNSLLP WYYRLTAVWG AHEGSLLLWV LIQAGWTVAV ATFSRGMPQE SVARVLAVMG WITLGFLLFI ILTSNPFLRT LPFFPIDGRD LNPLLQDPGL IIHPPMLYMG YVGFSVAFSF AIASLMTGRL DTAWARWSRP WTIAAWSFLT VGISLGSWWA YYELGWGGWW FWDPVENASF MPWLVGTALM HSLAVTEKRG TFKAWTVLLA ISAFSLSLLG TFLVRSGILV SVHAFASDPA RGMFILAFLV MVIGGSLLLF ALKGSSVRVR GNFALFSREN ALLANNILLI TALVVVLVGT LLPLVHKQLG LGSVSIGAPF FDMLFAWLMI PFAFLLGIGP LIRWKKDNLN SLVKRMVITG AVTVPLAAVM MVIFADKFLF MAYLGWMMSI WIIILHGFEM YERATHRHTL AVGLTKLGRS HWAMVSAHIG LAITIIGIAM VQNYSIEKDV RLAPGEHIEM NGYQFYFAGI RDTDGPNYDG YTADFDISLD GKAINTLHAE KRFYATSGAM MTEAAIDRGI TRDLYIAMGE RLDDNRSWAV RIYYKPFVRW IWAGTLFMAL GGVLAMSDKR YRFRKTSKKQ EA
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