| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2176 |
|---|
| Symbol | clcA |
|---|
| ID | 6987639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2337528 |
|---|
| End bp | 2338928 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643380460 |
|---|
| Product | chloride channel protein |
|---|
| Protein accession | YP_002263544 |
|---|
| Protein GI | 209695615 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0038] Chloride channel protein EriC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.462447 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAAAT CACCCAATTT CCGCTTTTTT CAAGGCGGTC TGTTAAAACA CCGTACCACA
CCGAAATTCT TAACAACTCA AACTGAATAT TTTTCATTGC TTTTTTTATC GGCACTCGTT
GGGGGGATCA CCGGCTCTGT AGTTGCATTA TTCGAAGAGT CTATTCGTTG GATCACAGAG
CAGCGTTTAA CGTTTGTTCA TACGCTTCCT TACGCTGAAT ATATTGCTCT GGTTGCGGCT
GTTTTAGCCG GGGCGGCTAT GGCTGCGGTT GGTTTTTGGT TAACGTTTAA ATTTGCACCA
GAAGTGGCGG GCAGTGGTAT TCCCCATATT GAAGGGGCAC TTGATGGTAC GCATGAAATC
CGGTGGCATA GAGTATTACC GATTAAGTTT ATTGCTGGCA CATTAACTAT TGGATCCGGG
ATGGTACTGG GTCGAGAAGG GCCATCTATT CAAATTGGTG GTGCCGTTGG ACGAATGATT
GCCAGTAAAG GTAAGCGTTT TAGTCACACA ACTCATATTT TAACCGCAGC AGGTGCGGCG
GCGGGGTTGG CTGCGGCATT TAATGCTCCT CTTGCTGGTA TCCTATTTGT TGTCGAAGAA
ATGCGTCCGC AGTTTCGTTA CAGTATTACG TCGATTAAAT GCGTTACATT AGCGACAGCA
GTCGCCACTA TTGTTATGCG TTCTTTGCAT GGACAAGCCG CGTTCTTGGA TATACCTCAC
TTTGATGTCC CTCCATTACG ATCTCTTATC TTATTTGCTG TTTTGGGTAT TTTATTTGGG
GTGATTGGGG TTAACTTTAA TAAGTGGATT TTGAAAGGGA CAAGTCGAGT TAAAGAATAT
CATCAAAATA AATTATCACG ATTAGTGCTT GTTGGTGCGA TGTTTGGTGG TACTTTTGCT
TTTTTACAAT TGGTGGTTCC TAAACTGTCA GGCAGTGGGA TGGAGATCAT TACAGAAATG
TTTCATAGTC CAATGATGTG GATGGTAATG GTTGGATTTT TTGTTCTGAG AATTATTGTT
ACCGTCGCTT GTTTTGCATC TGGTGCTCCG GGGGGGATTT TTGCCCCAAT GCTAACTCTA
GGTACCTTAT TAGGTTTGTC TTATGGCATC GTGATGGCGG CTTGGTTTCC TGAATGGGTT
TCAGAACCCG GAGTTTACGC GATTGCAGGT ATGGGGGCAC TGTTTGCTGC CACAGTTCGA
GCTCCGGTAA CGGGGATAAT ACTCGTTGTT GAAATGACAA ATAATTATCA ACTAATTTTA
CCATTATTAG TGACGTGCCT AGGGGCTACC TTTATTGCGC AAGCTTTAGG CGGTCAACCG
TTGTATTCAG CATTACTCAA ACAATCGTTA CTTGAGGATA AAGAGTTGAG GGTTGATAAA
AATAGCCCAG CAAGTAATTA A
|
|---|
| Protein sequence | MPKSPNFRFF QGGLLKHRTT PKFLTTQTEY FSLLFLSALV GGITGSVVAL FEESIRWITE
QRLTFVHTLP YAEYIALVAA VLAGAAMAAV GFWLTFKFAP EVAGSGIPHI EGALDGTHEI
RWHRVLPIKF IAGTLTIGSG MVLGREGPSI QIGGAVGRMI ASKGKRFSHT THILTAAGAA
AGLAAAFNAP LAGILFVVEE MRPQFRYSIT SIKCVTLATA VATIVMRSLH GQAAFLDIPH
FDVPPLRSLI LFAVLGILFG VIGVNFNKWI LKGTSRVKEY HQNKLSRLVL VGAMFGGTFA
FLQLVVPKLS GSGMEIITEM FHSPMMWMVM VGFFVLRIIV TVACFASGAP GGIFAPMLTL
GTLLGLSYGI VMAAWFPEWV SEPGVYAIAG MGALFAATVR APVTGIILVV EMTNNYQLIL
PLLVTCLGAT FIAQALGGQP LYSALLKQSL LEDKELRVDK NSPASN
|
|---|
| |