Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I2057 |
Symbol | aapJ |
ID | 6988207 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 2204096 |
End bp | 2205124 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643380344 |
Product | general L-amino acid-binding periplasmic protein precursor |
Protein accession | YP_002263433 |
Protein GI | 209695504 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.288114 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTTA AATCAAACAC TCTATTCGCA GCGATTGCAA CCTCAGCGGC TCTATTGTCA ACACAAGCTA CTGCCGCTGA TGGAACCCTA GAAAAAGTAG TTAAGAATGG TTATCTACAA TGTGGGGTTA GTACTGGTCT ACCTGGATTC TCAAACCCTA ACTCAAAAGG AGAATGGGAA GGTATTGATG TTGAATACTG CCAAGCCGTT GCTGCTGCCG TATTAGGCGA TAAAACAAAA GTTAAATACG TGCCATTAAC CGCAAAAGAG CGTTTTACTG CATTACAATC AGGTGAAATT GATGTGCTGT CACGTAATAC AACATGGACA CTGCATCGTG ATACTTCCCT TGGCTTAAAT TTTGTTGGCG TTAACTATTA CGATGGTCAA GGCTTTATGG TCAAAAAAGA ACTTGGTCTC ACCAGTGCGA AAGAGCTTGA TGGTGCGTCT GTTTGTGTTC AATCAGGTAC CACTACCGAA CTAAACCTTG CTGATTACTT CCGTAATAAC AGTATGGAAT ATAAGCCTGT CGTATTTGAT ACGGCGGCAC AAACCTCGAA AGGATTTGAT GCTGGTCGAT GTGATGTACT AACCACTGAC CAATCAGGTC TTTATGCTCT TCGCCTAAAT CTAAAAGACC CAAAAACAGC ACAAATTTTA CCTGAAATCA TTTCAAAAGA GCCGCTAGGC CCTGTGGTTC GTCAAGGCGA CGATAAATGG TTTAACATCA ACAAATGGGT GTTGAGCGCC ATGATAAACG CTGAAGAGTA TGGCATTACA TCTGCAAATG CAGATCAAAT GCTTAAATCT AAAGATCCAA ACATCAAACG TATCCTTGGT GTTGATGGTC CTAAAGGAAA AGGCTTAGGA ATTCGTGATG ATTGGGGTTA CCAAGTAATT AAACAAGTGG GTAACTACGG AGAGAGCTTT GAGCGTACCG TTGGTACTGG TTCTCCACTT CAAATATCTC GTGGCGTAAA TGCCCTTTGG AATGCGGGGG GCTTCATGTA CGCCGCACCA ATCCGTTAA
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Protein sequence | MNFKSNTLFA AIATSAALLS TQATAADGTL EKVVKNGYLQ CGVSTGLPGF SNPNSKGEWE GIDVEYCQAV AAAVLGDKTK VKYVPLTAKE RFTALQSGEI DVLSRNTTWT LHRDTSLGLN FVGVNYYDGQ GFMVKKELGL TSAKELDGAS VCVQSGTTTE LNLADYFRNN SMEYKPVVFD TAAQTSKGFD AGRCDVLTTD QSGLYALRLN LKDPKTAQIL PEIISKEPLG PVVRQGDDKW FNINKWVLSA MINAEEYGIT SANADQMLKS KDPNIKRILG VDGPKGKGLG IRDDWGYQVI KQVGNYGESF ERTVGTGSPL QISRGVNALW NAGGFMYAAP IR
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