| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2032 |
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| Symbol | |
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| ID | 6988652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 2178698 |
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| End bp | 2180341 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643380322 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_002263411 |
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| Protein GI | 209695482 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0351867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAACAG ACAACAAAAC GGCAGATGCC AACCTAGAAA GTATGCTGCG AATTTTTACT
GTTCCGGAAG CGCCCGATTC GACACTTGGT AAAATAGAAC AAGAACTCTC TCAAAATCTA
AATCAGTTTT TAAGAGAGCA TATTGTTGCC GAAGAAAAGC CATTAACGGA AATTGAAAAA
GACTTTACTG ACTCGTCAAT GCCAGAATAT CCAACCTATG TTTCTGAGCA TACCGAGCAT
TTATTAGAGA CCGTTGTTTC ACAGTCCGTT CATACTTCAG CGCCAAGCTT CATTGGTCAC
ATGACATCCG CATTGCCTTA TTTCTTAATG CCACTGTCAA AGATCATGAT TGCGTTAAAC
CAAAACTTGG TGAAAATTGA AACCTCTAAA GCCTTCACTC CATTAGAGCG CCAAGTTTTA
GGTATGTTAC ATCGATTGAT CTACGGTCAA GAAAGCGCAT TTTATGAACG TTGGATGCAC
AGTGCTGACC ACTCATTAGG CGCTTTTTGT TCTGGCGGGA CAATTGCAAA CATTACGGCG
TTATGGGTAG CACGAAATCG CTTATTACAA CCAGAAGGCA ATTTTAAAGG AATTGCTCAA
GAAGGGTTAT TTGCGGCTTT AACGCATTAC AAATACAGTG GTTTAGCTAT TTTTGTTTCA
GAACGTGGTC ATTACTCTGT AAAAAAAGCC GCTGATGTAC TTGGTATCGG TCAGGATAGC
GTTATTCCAG TCAAGACTGA TAACAATAAT CGCATTTGTC TGCATGATCT TAAGCTAAAG
ATGGCTCAAG CCAAAGAGAA AAACATTAAG CCATTAGCTA TCATCGGCGT TGCAGGTACA
ACAGAAACTG GCACTATCGA TCCATTACGA GCTTTAGCTG AAGTAGCAAA ACAAGTAAAT
TGCCATTTCC ACGTTGATGC CGCTTGGGGC GGAGCGACCT TAATGTCGAA CCAATACCGT
TATTTACTTG ATGGCATCGA TTTAGCGGAT TCAGTCACCA TTGATGCACA TAAGCAACTT
TATGTTCCTA TGGGTGCAGG CATGGTCATA TTTAAAGACC CAGAATTGAT GTCTTCTATT
CAACATCATG CCGAGTATAT TTTACGAAAA GGTTCAAAAG ATTTAGGCAG ACACACATTA
GAAGGCTCTC GAAGTGGTAT GGCAATGCTG CTTTATTCTT GTTTTAATGT AATCAGTCGA
CCTGGCTATG AATTATTGAT CAATCAAAGC ATTGAGAAAG CAAAATATTT TGCTGAGATT
ATTGATCAAC AAGACGATTT TGAAGTTATT ACTCAGCCTG AGCTTTGTTT ATTAACCTAT
CGATATATTC CAAAGAATGT AACGTTAGCA CTTACAAAAG CAAATCCTGA GCAAACCATT
GAGATTTATG ACCACCTAGA TGAACTGACT AAGTTTATTC AAAAAACTCA ACGAGAAACC
GGGAAATCAT TTGTATCTCG AACTCGACTA ACACCTGAAG CGTATCAAAA TATGCCGACC
ATCGTATTTC GAGTCGTTTT AGCCAATCCG TTAACCACCA AAGAGATCCT TCACTCTGTA
TTAATTGAGC AGAGAGAAAT CGCACAAAAA AGCGAAATAT CACTCCCACA ATTGACGAAA
TTGGCTGATT CTATTTTAAA ATAA
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| Protein sequence | MVTDNKTADA NLESMLRIFT VPEAPDSTLG KIEQELSQNL NQFLREHIVA EEKPLTEIEK
DFTDSSMPEY PTYVSEHTEH LLETVVSQSV HTSAPSFIGH MTSALPYFLM PLSKIMIALN
QNLVKIETSK AFTPLERQVL GMLHRLIYGQ ESAFYERWMH SADHSLGAFC SGGTIANITA
LWVARNRLLQ PEGNFKGIAQ EGLFAALTHY KYSGLAIFVS ERGHYSVKKA ADVLGIGQDS
VIPVKTDNNN RICLHDLKLK MAQAKEKNIK PLAIIGVAGT TETGTIDPLR ALAEVAKQVN
CHFHVDAAWG GATLMSNQYR YLLDGIDLAD SVTIDAHKQL YVPMGAGMVI FKDPELMSSI
QHHAEYILRK GSKDLGRHTL EGSRSGMAML LYSCFNVISR PGYELLINQS IEKAKYFAEI
IDQQDDFEVI TQPELCLLTY RYIPKNVTLA LTKANPEQTI EIYDHLDELT KFIQKTQRET
GKSFVSRTRL TPEAYQNMPT IVFRVVLANP LTTKEILHSV LIEQREIAQK SEISLPQLTK
LADSILK
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